View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12211_low_10 (Length: 253)
Name: NF12211_low_10
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12211_low_10 |
 | |
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| [»] scaffold0024 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2975051 - 2974808
Alignment:
| Q |
1 |
catcgaggctagaacaaccacactaaagtcacttaaatcaattcaatatagtcaattaattcaaaaacagatttttatcattgtggaacca------tgt |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
2975051 |
catcgaggctagaacaaccacactaaa-tcacttaaatcaattcaatataatcaattaattcaaaaacagatttttatctttgtggaaccaaacacatgt |
2974953 |
T |
|
| Q |
95 |
aagacatgacattagataggagtttctacctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagt |
194 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2974952 |
aagacatgacattagttaggagtttctacctgcacccctagatttttccaacaacactatcaggccaattttgttcaacaacaatacaacatgatcaagt |
2974853 |
T |
|
| Q |
195 |
tgcttttctatttagcagaactcctatttatatgaaattataatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2974852 |
tgcttttctatttagcagaactcctatttatatgaaattataatt |
2974808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 2952969 - 2952759
Alignment:
| Q |
35 |
aaatcaattcaatatagtcaattaattcaaaaacagatttttatcattgtggaac------catgtaagacatgacattagataggagtttctacctgca |
128 |
Q |
| |
|
|||||| ||| ||| | ||||||||||||||||||| |||||||| |||||| ||||| |||| |||||||| ||||| |||||||||||| |
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| T |
2952969 |
aaatcatttctataaaatcaattaattcaaaaacagtattttatcaccatggaacgaaacacatgtgagacgcgacattagttaggaatttctacctgca |
2952870 |
T |
|
| Q |
129 |
cccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctatttatatg |
228 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
2952869 |
cccctagattttgccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttttatttagcagaacacccatttatatg |
2952770 |
T |
|
| Q |
229 |
aaattataatt |
239 |
Q |
| |
|
|||||| |||| |
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|
| T |
2952769 |
aaattacaatt |
2952759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 2935631 - 2935410
Alignment:
| Q |
29 |
tcacttaaatcaattcaatatagtcaattaattcaaaaacagattttt--atcattgtggaacca------tgtaagacatgacattagataggagtttc |
120 |
Q |
| |
|
||||||||||| |||| ||| | ||||||||||||||||||| ||||| |||| |||||||||| || |||||||||||||| || ||||||| |
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| T |
2935631 |
tcacttaaatctattctataaaatcaattaattcaaaaacagttttttttatcaatgtggaaccaaacagatgcgagacatgacattagttatgagtttc |
2935532 |
T |
|
| Q |
121 |
tacctgcacccctagatttttccaacaaca---ctatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactc |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| | |
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|
| T |
2935531 |
tacctgcacccctagattttgccaacaacagtactatcagaccaattttgttcaacaacaatacaacatgatcaatatgcttttttatttaacagaacac |
2935432 |
T |
|
| Q |
218 |
ctatttatatgaaattataatt |
239 |
Q |
| |
|
| ||||||||||||||| |||| |
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|
| T |
2935431 |
ccatttatatgaaattacaatt |
2935410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 3002893 - 3003036
Alignment:
| Q |
96 |
agacatgacattagataggagtttctacctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagtt |
195 |
Q |
| |
|
||||| |||||||| | | |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3002893 |
agacacgacattagtttgaagtttctacctgcacccctagattttgccaaccacactatcagacccattttgttcaacaacaatacaacatgatcaagtt |
3002992 |
T |
|
| Q |
196 |
gcttttctatttagcagaactcctatttatatgaaattataatt |
239 |
Q |
| |
|
||| || |||| |||||||| |||||||||||||||||| |||| |
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|
| T |
3002993 |
gctcttttattcagcagaacacctatttatatgaaattacaatt |
3003036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 2955084 - 2954896
Alignment:
| Q |
52 |
tcaattaattcaaaaacagatttttatcattgtggaacca------tgtaagacatgacattagataggagtttctacctgcacccctagatttttccaa |
145 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| || |||| | |||||||| |||||||||||||||||| ||||||||||| |||| |
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|
| T |
2955084 |
tcaattaattcaaaaacagttttttatcaccctggaaccaaacacatgcaagatacgacattagttaggagtttctacctgcaaccctagattttgccaa |
2954985 |
T |
|
| Q |
146 |
caacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctatttatatgaaatta |
234 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||| ||||||| | |||| ||| ||||| |||||| |||||||||||||||||| |
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|
| T |
2954984 |
ccacactatcagacccattttgttcaacaacaataaaacatgacctcgttgttttaatatttggcagaagacctatttatatgaaatta |
2954896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 2965453 - 2965364
Alignment:
| Q |
111 |
taggagtttctacctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttt |
200 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2965453 |
taggagtttctacctgaaaccctagattttgccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttt |
2965364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 2986672 - 2986579
Alignment:
| Q |
103 |
acattagataggagtttctacctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttg |
196 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2986672 |
acattagttaggagtttctagttgcacccctagattttgccaaccacactatcagacccattttgttcaacaacaatacaacatgatcaagttg |
2986579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 2928058 - 2927956
Alignment:
| Q |
96 |
agacatgacattagataggagtttctacctgcacccctagattttt--ccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaag |
193 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2928058 |
agacgtgacattagtcaggagtttctacctgcaccccaagattttttgccaaccacgctatcagacccattttgttcaacaacaatacaacatgatcaag |
2927959 |
T |
|
| Q |
194 |
ttg |
196 |
Q |
| |
|
||| |
|
|
| T |
2927958 |
ttg |
2927956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 2983798 - 2983698
Alignment:
| Q |
105 |
attagataggagtttctacctgcacccctagatttttccaacaacactat-----cagaccaattttgttcaacaacaatacaacatgatcaagttgctt |
199 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| | ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2983798 |
attagttaggagtttttacctgcacccctagattttgcgaacaacactttaatttcagaccaattttgtttaacaacaatacaacatgatcaagttgctt |
2983699 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
2983698 |
t |
2983698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 2979855 - 2979784
Alignment:
| Q |
168 |
ttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctatttatatgaaattataatt |
239 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| ||||| ||||||| || ||||||||||| ||| |||| |
|
|
| T |
2979855 |
ttcaacaacaatgcaacatgataaagttgcttttttatttggcagaacaccaatttatatgaacttacaatt |
2979784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 2658141 - 2658189
Alignment:
| Q |
152 |
tatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttt |
200 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2658141 |
tatcaaacccattttgtgcaacaacaatagaacatgatcaagttgcttt |
2658189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 2930170 - 2930118
Alignment:
| Q |
187 |
gatcaagttgcttttctatttagcagaactcctatttatatgaaattataatt |
239 |
Q |
| |
|
|||||||||||| | | ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
2930170 |
gatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatt |
2930118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 34107 - 34300
Alignment:
| Q |
34 |
taaatcaattcaatatagtcaattaattcaaaaacagatttttatcattgtggaacca------tgtaagacatgacattagataggagtttctacctgc |
127 |
Q |
| |
|
||||||||||| ||| | ||||||||||||| ||||| ||||||||| || |||||| ||| ||||| ||||||| ||||||||||||| ||| |
|
|
| T |
34107 |
taaatcaattctataaaatcaattaattcaagaacagttttttatcactg--gaaccaaacacatgtgagacacgacattacttaggagtttctacttgc |
34204 |
T |
|
| Q |
128 |
acccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctatttata |
226 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
34205 |
acccgtagattttgccaacaacactatcagaccaattttgttcaacaacatt---acatgatcaagttgctcttttatttagcagaacacctatttata |
34300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 43404 - 43619
Alignment:
| Q |
29 |
tcacttaaatcaattcaatatagtcaattaattcaaaaacagatttttatcattgtggaaccatgta------agacatgacattagataggagtttcta |
122 |
Q |
| |
|
|||| |||||||||| ||| | ||||||||||||| || || ||||||||| |||||||||| | ||||| |||||||| || ||||||||| |
|
|
| T |
43404 |
tcacctaaatcaattatataaaatcaattaattcaacaatagttttttatcaccgtggaaccatacacatgcgagacacgacattagttaagagtttcta |
43503 |
T |
|
| Q |
123 |
cctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctat- |
221 |
Q |
| |
|
| |||||||||| ||||| |||| |||||| || || |||||||||||||| || || ||| |||||||||||| | ||| |||||| ||||| |
|
|
| T |
43504 |
catgcacccctatattttgccaatcacactaacatacacattttgttcaacaataa---aatctgaccaagttgcttttttgtttggcagaagacctata |
43600 |
T |
|
| Q |
222 |
-ttatatgaaattataatt |
239 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
43601 |
tttatatgaaattacaatt |
43619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 3339942 - 3339858
Alignment:
| Q |
102 |
gacattagataggagtttctacctgcacccctagatttttccaacaacactatcagaccaattttgttcaacaacaatacaacat |
186 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| ||||| | | ||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
3339942 |
gacattagttaggagtttctacatgcacccctagattttgccaaccatattatcagacccattttgttcaaaaacagtacaacat |
3339858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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