View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12211_low_11 (Length: 208)

Name: NF12211_low_11
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12211_low_11
NF12211_low_11
[»] chr6 (3 HSPs)
chr6 (75-195)||(23332595-23332715)
chr6 (4-80)||(23322297-23322373)
chr6 (4-80)||(23332464-23332540)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 23332595 - 23332715
Alignment:
Q  75 atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23332595 atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat 23332694  T
Q  175 ttcgactcctgatctctctgc 195  Q
    |||||||||||||||||||||    
T  23332695 ttcgactcctgatctctctgc 23332715  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 23322297 - 23322373
Alignment:
Q  4 gcagaacctgtgttttttatagacaattcagactgacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  23322297 gcagaacctgtgttttttatagacaattcagactgacatcaccaaacacaaacgttgtaaactccaaacgcatatgt 23322373  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 23332464 - 23332540
Alignment:
Q  4 gcagaacctgtgttttttatagacaattcagactgacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  23332464 gcagaacctgtgttttttatagacaattcagactgacatcaccaaacacaaacgttgtaaactccaaacgcatatgt 23332540  T

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