View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12211_low_2 (Length: 566)
Name: NF12211_low_2
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12211_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 45190705 - 45191237
Alignment:
| Q |
16 |
gctgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttac |
115 |
Q |
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| T |
45190705 |
gctgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttac |
45190804 |
T |
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| Q |
116 |
ctctttgtccaaaatctnnnnnnngttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaag |
215 |
Q |
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| T |
45190805 |
ctctttgtccaaaatctaaaaaaagttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaag |
45190904 |
T |
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| Q |
216 |
agggacaggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattggttatggaggatttggtaaagtgtac |
315 |
Q |
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| T |
45190905 |
agggacaggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattggttatggaggatttggtaaagtgtac |
45191004 |
T |
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| Q |
316 |
cttgggacattggatgatggaacaaatgttgctgtaaaaagaggaggtggtggttctgagcaaggaataaatgagttcagaaccgaactaaacatgcttt |
415 |
Q |
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| T |
45191005 |
cttgggacattggatgatggaacaaatgttgctgtaaaaagaggaggtggtggttctgagcaaggaataaatgagttcagaaccgaactaaagatgcttt |
45191104 |
T |
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| Q |
416 |
ctaagctgcgacatcgccacctagtttcactaataggtttctgtgatgaaaactcagagatggttcttgtatacgattacatgtctaatggcccttttcg |
515 |
Q |
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| T |
45191105 |
ctaagctgcgacatcgccacctagtttcactaataggtttctgtgatgaaaactcagagatggttcttgtatacgattacatgtctaatggcccttttcg |
45191204 |
T |
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| Q |
516 |
ctcgcacctttataactccaacttttctccttt |
548 |
Q |
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| T |
45191205 |
ctcgcacctttataactccaacttttctccttt |
45191237 |
T |
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