View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12211_low_3 (Length: 526)
Name: NF12211_low_3
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12211_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 14341346 - 14340836
Alignment:
| Q |
1 |
agagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcacatgcaaagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14341346 |
agagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccaactgatatatgtagaggggtcatcacatgcaaagccataa |
14341247 |
T |
|
| Q |
101 |
aatgttccattttttatggacttc---ccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttataaaacctgccacaa |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
14341246 |
aatgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattcataaaacctgccacaa |
14341147 |
T |
|
| Q |
198 |
atcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaagataacaaaaacttaattgaacataattaccttggct |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341146 |
atcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatcatttaaagataacaaaaacttaattgaacataattaccttggct |
14341047 |
T |
|
| Q |
298 |
ccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaacacttggtctttt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14341046 |
ccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaacacttggtctttt |
14340947 |
T |
|
| Q |
398 |
agctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggataaaagaagtaat |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340946 |
agctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggataaaagaagtaat |
14340847 |
T |
|
| Q |
498 |
aatagggtata |
508 |
Q |
| |
|
||||||||||| |
|
|
| T |
14340846 |
aatagggtata |
14340836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 64 - 508
Target Start/End: Complemental strand, 3602400 - 3601956
Alignment:
| Q |
64 |
gatatatgtagaggggtcatcacatgcaaagccataaaatgttccattttttatggacttc---ccacaataatgtatttcgttaccttggtaacttcca |
160 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3602400 |
gatatatgtagaggaatcatcacatgcaatgccataaactgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttcca |
3602301 |
T |
|
| Q |
161 |
caacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaa |
260 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3602300 |
caacaaaattccaatggattcacaaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatattttaaa |
3602201 |
T |
|
| Q |
261 |
gataacaaaaacttaattgaacataattaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaa |
360 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3602200 |
gataacaaaaacttaattgaacat---taccttggttccttgcattgctgataagtgtatatttgaccgtgtaaacatcaacatatgtaaatttggctaa |
3602104 |
T |
|
| Q |
361 |
tggaaacattctccttagctgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaag |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3602103 |
tggaaacattctccttagctgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaag |
3602004 |
T |
|
| Q |
461 |
ttactcttctcgttcttgtgtggataaaagaagtaataatagggtata |
508 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602003 |
ttacccttctcgttcttgtgtggataaaagaagtaataatagggtata |
3601956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 297 - 470
Target Start/End: Complemental strand, 3591225 - 3591052
Alignment:
| Q |
297 |
tccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaacacttggtcttt |
396 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3591225 |
tccttgcgttgctgataagtttatattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacacttggtcttt |
3591126 |
T |
|
| Q |
397 |
tagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttct |
470 |
Q |
| |
|
||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
3591125 |
tagctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct |
3591052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 286 - 462
Target Start/End: Complemental strand, 3569173 - 3568998
Alignment:
| Q |
286 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaac |
385 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3569173 |
attaccctggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaac |
3569074 |
T |
|
| Q |
386 |
acttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagtt |
462 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3569073 |
gctt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaagtt |
3568998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 3569570 - 3569487
Alignment:
| Q |
151 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || |||| |||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3569570 |
gtaacttccacagcaaaattccaatggattcacaagacctaccacaaatcatgcaagattaaaaattaaaacttaattgtgcac |
3569487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 3577296 - 3577213
Alignment:
| Q |
151 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
234 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| |||||| |||||||||| |||||| |||||| |||| |||||| ||||||| |
|
|
| T |
3577296 |
gtaacttccacagcaaaatttcaatggatttacaaaaccagccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3577213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 3591637 - 3591554
Alignment:
| Q |
151 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
234 |
Q |
| |
|
|||| ||||||| || ||| ||||||||| | ||||||||||||||||| |||||| |||||| |||| |||||| ||||||| |
|
|
| T |
3591637 |
gtaatttccacagaaatatttcaatggattcacaaaacctgccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3591554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 3602438 - 3602399
Alignment:
| Q |
3 |
agagaatttgtttaacaatccattcatttgctgcttggga |
42 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
3602438 |
agagaatttgtttagcaatccattcctttgctgcttggga |
3602399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 1409581 - 1409397
Alignment:
| Q |
286 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaac |
385 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1409581 |
attaccttggctctttgcattgctaataagtttatatttggctgtgtacacatcaacatatgtaaacttggctaatggaaactttcgccttagctgaaac |
1409482 |
T |
|
| Q |
386 |
acttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttct |
470 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | |||||||||||| ||||| |
|
|
| T |
1409481 |
actttgtcttttagctgcctgttatattcttgagcaagctcattgtgaggtataacacagccatagacatccaagttacccttct |
1409397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 1410044 - 1409817
Alignment:
| Q |
3 |
agagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcacatgcaaagccataaaa |
102 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||| ||||| |||||||||||||||||||| || |||| | |||| || | |||||||| | |||||||| |
|
|
| T |
1410044 |
agagaatttgtttagcaacccattgatttgcagcttgagagtagtgtataccatcccaactaatatgtttagaaggattatcacatggattgccataaac |
1409945 |
T |
|
| Q |
103 |
tgttccattttttatggacttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcat |
202 |
Q |
| |
|
|||||||||| |||||| |||| | | ||| ||| | || ||| | |||||||||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1409944 |
tgttccatttattatggccttcaacccacaatttatgtggtaaccatagtaacttccacagcaaaattccaatggattcacaaaacctgccacaaat--- |
1409848 |
T |
|
| Q |
203 |
gcaagcataaaagttaaaacttaattgtgcac |
234 |
Q |
| |
|
||||||| | ||||||||| ||||||||||| |
|
|
| T |
1409847 |
-caagcatgagagttaaaacctaattgtgcac |
1409817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 470
Target Start/End: Complemental strand, 1412624 - 1412443
Alignment:
| Q |
289 |
accttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaacact |
388 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| || |||| | ||||||||||||||||||||| | | | |||||||||| | | ||||| |
|
|
| T |
1412624 |
acctcggctccttgcattgctgattagttcatatttggctttgtacatatcaacatatgtaaatttggcctgtaggagttttctccttagataagacact |
1412525 |
T |
|
| Q |
389 |
tggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttct |
470 |
Q |
| |
|
||||| ||||||| | ||||| |||| ||||| | | ||| |||||||| |||||||||||||| || | ||||| ||||| |
|
|
| T |
1412524 |
tggtcctttagcttcttgttaaattcttgagctattttgttctgaggtttcacacagccattggcgtctaggttacccttct |
1412443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 1417259 - 1417191
Alignment:
| Q |
289 |
accttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggc |
357 |
Q |
| |
|
|||||||||| ||||||||||||| ||| || |||| || |||| | ||||||||||||||||||||| |
|
|
| T |
1417259 |
accttggctctttgcattgctgattagttcatgtttggctttgtacatatcaacatatgtaaatttggc |
1417191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 1421747 - 1421679
Alignment:
| Q |
289 |
accttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggc |
357 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||| || |||| | ||||||||||||||||||||| |
|
|
| T |
1421747 |
accttggctctttgcattgctgattagttcatatttagctttgtacatatcaacatatgtaaatttggc |
1421679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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