View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12211_low_5 (Length: 405)
Name: NF12211_low_5
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12211_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 26085343 - 26085714
Alignment:
| Q |
18 |
attataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagat |
117 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085343 |
attataaaattactaattgaagttagagaacttcaatgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagat |
26085442 |
T |
|
| Q |
118 |
tgagaaacaaagaagtcattaggaaaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085443 |
tgagaaacaaagaagtcattaggaaaatagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagatt |
26085542 |
T |
|
| Q |
218 |
gagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
26085543 |
gagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggtagttttgttttg |
26085642 |
T |
|
| Q |
318 |
ttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagc |
389 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
26085643 |
ttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagc |
26085714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 54 - 392
Target Start/End: Original strand, 26067804 - 26068142
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
26067804 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaagaaaact |
26067903 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26067904 |
atgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
26068003 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaagttttggagggtt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
26068004 |
tgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaagctttggagggtt |
26068103 |
T |
|
| Q |
354 |
aattaagaaatgaagaattgggtggtgagtttgagcaca |
392 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
26068104 |
aattaagaaatggagaattgggtggtcagtttgagcaca |
26068142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 54 - 393
Target Start/End: Original strand, 26056142 - 26056481
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
26056142 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaagaaaact |
26056241 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26056242 |
atgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaagggtccttctctttctc |
26056341 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaagttttggagggtt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26056342 |
tgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaagctttggagggtt |
26056441 |
T |
|
| Q |
354 |
aattaagaaatgaagaattgggtggtgagtttgagcacag |
393 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
26056442 |
aattaagaaatggagaattgggttgtcagtttgagcacag |
26056481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 54 - 393
Target Start/End: Original strand, 26111716 - 26112060
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26111716 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
26111815 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26111816 |
atgatgcatccaataagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
26111915 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag--ttttggaggg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| | | |||||| |
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|
| T |
26111916 |
tgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttctgaagcttataggaggg |
26112015 |
T |
|
| Q |
352 |
t---taattaagaaatgaagaattgggtggtgagtttgagcacag |
393 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26112016 |
ttaataattaagaaatgaagaattgggtggtcagtttgagcacag |
26112060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 392
Target Start/End: Original strand, 26128670 - 26129010
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||| | | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26128670 |
tgatgaaaaagaaacctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaact |
26128769 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||| ||||| ||| |||||||| |||||| | |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
26128770 |
atgatgcatccagtaagaactactatgattacagcggtaacaatctttgatatgcttagagaataagggttgttcttcatcaagggtccttctctttctc |
26128869 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag--ttttggaggg |
351 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||| | | |||||| |
|
|
| T |
26128870 |
tgtgctcaatcattgtatccaccaccacctcaaagattgagattgaaatggtagtattgtttagttctggttatatagggttctgaagcttataggaggg |
26128969 |
T |
|
| Q |
352 |
ttaattaagaaatgaagaattgggtggtgagtttgagcaca |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26128970 |
ttaattaagaaatgaagaattgggtggtcagtttgagcaca |
26129010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 54 - 293
Target Start/End: Original strand, 26121243 - 26121482
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
26121243 |
tgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaagt |
26121342 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
26121343 |
aagatgcatccaataagaactccaatgattacagtggtaacgattattgatatgagtagagaatgagagttgttcttcatcaagcgtccttctctttctc |
26121442 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactga |
293 |
Q |
| |
|
|| || ||||||||||||||||||| | |||||||||||| |
|
|
| T |
26121443 |
tgagcccaatcattgtatccaccactacctcaaagactga |
26121482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 54 - 314
Target Start/End: Original strand, 26038237 - 26038497
Alignment:
| Q |
54 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaact |
153 |
Q |
| |
|
|||||||||| |||||||||| |||| | || |||||| | | ||||| |||| |||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
26038237 |
tgatgaaaataaaacctgggttttggatccaacaacagcgatgcgacgatttgatgtaatagattgagaaacaaagaagccattaggaaaaaagaaagct |
26038336 |
T |
|
| Q |
154 |
atgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctc |
253 |
Q |
| |
|
| |||||||||| |||||| ||||| | ||||| |||| |||||||||| || ||||||| |||||| |||| ||| || |||||||||||||||| |
|
|
| T |
26038337 |
aagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcattaagggtccttctctttctc |
26038436 |
T |
|
| Q |
254 |
tgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtt |
314 |
Q |
| |
|
||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
26038437 |
tgcgcccaatcattgtagctaccaccacctcaaagactgagattgagatggtagttttgtt |
26038497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 26048989 - 26049075
Alignment:
| Q |
306 |
agttttgtttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcaca |
392 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
26048989 |
agttttgttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcaca |
26049075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 26056653 - 26056610
Alignment:
| Q |
103 |
attgaggtaatagattgagaaacaaagaagtcattaggaaaaaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26056653 |
attgaggtaatagattgagaaacaaagatgtcattaggaaaaaa |
26056610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 26065545 - 26065592
Alignment:
| Q |
117 |
ttgagaaacaaagaagtcattaggaaaaaagaaaactatgatgcatcc |
164 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
26065545 |
ttgagaaacaaagaagtcattgggaaaaaagaaagctaagatgcatcc |
26065592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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