View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12211_low_9 (Length: 273)

Name: NF12211_low_9
Description: NF12211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12211_low_9
NF12211_low_9
[»] chr6 (9 HSPs)
chr6 (7-253)||(2975081-2975327)
chr6 (191-266)||(10074352-10074428)
chr6 (4-61)||(16107853-16107910)
chr6 (51-196)||(2975390-2975538)
chr6 (206-268)||(5832015-5832076)
chr6 (226-268)||(12071678-12071720)
chr6 (155-196)||(2378071-2378112)
chr6 (191-267)||(10073604-10073681)
chr6 (207-248)||(10911676-10911717)
[»] chr1 (10 HSPs)
chr1 (4-190)||(66267-66457)
chr1 (4-90)||(22077394-22077480)
chr1 (4-84)||(22077734-22077814)
chr1 (226-266)||(32168686-32168727)
chr1 (4-42)||(50051971-50052009)
chr1 (191-244)||(24131999-24132051)
chr1 (191-255)||(41759576-41759641)
chr1 (191-255)||(50052024-50052088)
chr1 (226-266)||(3537589-3537628)
chr1 (4-44)||(34364680-34364720)
[»] chr4 (8 HSPs)
chr4 (191-267)||(36608647-36608724)
chr4 (191-255)||(3271880-3271947)
chr4 (191-255)||(23817679-23817744)
chr4 (191-255)||(54936289-54936353)
chr4 (191-273)||(36629330-36629413)
chr4 (191-268)||(39792845-39792923)
chr4 (191-264)||(55933113-55933187)
chr4 (226-270)||(39404147-39404191)
[»] chr5 (5 HSPs)
chr5 (226-270)||(6500579-6500623)
chr5 (51-125)||(35150229-35150303)
chr5 (230-270)||(6500955-6500995)
chr5 (206-268)||(3295002-3295064)
chr5 (134-190)||(13415940-13415998)
[»] chr3 (6 HSPs)
chr3 (191-265)||(37990967-37991042)
chr3 (226-255)||(21832345-21832374)
chr3 (4-61)||(22304368-22304425)
chr3 (134-190)||(22304489-22304548)
chr3 (226-273)||(22304322-22304370)
chr3 (226-273)||(22304698-22304746)
[»] chr2 (5 HSPs)
chr2 (191-265)||(3673161-3673236)
chr2 (222-266)||(12349150-12349194)
chr2 (160-194)||(42514962-42514996)
chr2 (226-255)||(14745667-14745696)
chr2 (226-270)||(41283460-41283504)
[»] chr7 (2 HSPs)
chr7 (191-268)||(1085603-1085681)
chr7 (226-268)||(30253699-30253741)
[»] chr8 (6 HSPs)
chr8 (226-267)||(30441214-30441255)
chr8 (8-90)||(1014144-1014225)
chr8 (194-255)||(9309451-9309512)
chr8 (206-268)||(41129097-41129159)
chr8 (4-44)||(147624-147664)
chr8 (4-87)||(18371895-18371978)
[»] scaffold0702 (1 HSPs)
scaffold0702 (155-196)||(314-355)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 2975081 - 2975327
Alignment:
Q  7 ccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttcttgcggagaaaccagcaacggcggtatacgttccttgtgccg 106  Q
    ||||||||| || |||| |||||||||||  ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| | || ||    
T  2975081 ccaacagtgatatcagagccccggttcgaagaagggtatggctaagtcagccgatttcttgtggagaaaccagcaacggcggtatacgttccatatgtcg 2975180  T
Q  107 gtccattgcagagaagccaacacgaaaatacaagcaagctaagagcttcttgaagagggagcatgttgaatagatggactcacatttgggtaagtgtgtg 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2975181 gtccattgcggagaagccaacacgaaaatacaagcaagctaagagcttcttgaagagggagcatgttgaatagatggactcacatttgggtaagtgtgtg 2975280  T
Q  207 tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcc 253  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  2975281 tgtctctctgagtaatgtggttgttctagcctcgatgtggacagtcc 2975327  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 10074428 - 10074352
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccct 266  Q
    |||||||||| ||||| ||||||||| | || ||| |||||||||||||||||||||| ||||||| ||||||||||    
T  10074428 tttgggtaagagtgtggtgtctctctcactagtgtggttgttctagcctcgatgtggatagtcccccaggctcccct 10074352  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 16107853 - 16107910
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggt 61  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| |  |||||||||||    
T  16107853 gacccaacagtggtatcagagccccggttcgacgaagggtatgaccgaggcagccggt 16107910  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 2975390 - 2975538
Alignment:
Q  51 aggcagccggtttcttgcggagaaaccagcaacggcggtatacgttccttgtgccggtccattgcagagaagccaac-acgaaaatacaagcaagctaag 149  Q
    ||||||| ||| | |||||||||||||| ||| | || |||| |||||||||  | |||| ||||||||||||| || ||||  |||| |||||| ||||    
T  2975390 aggcagctggtctgttgcggagaaaccaacaatgacgatataagttccttgtatcagtccgttgcagagaagccgacaacgacgatacgagcaag-taag 2975488  T
Q  150 agctt---cttgaagagggagcatgttgaatagatggactcacatttggg 196  Q
    |||||   ||| ||| |||| |||| |||||||||| ||||||| |||||    
T  2975489 agcttccgcttaaagggggaacatgatgaatagatgcactcacacttggg 2975538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 5832076 - 5832015
Alignment:
Q  206 gtgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    |||||||||||| |  ||| ||||||||||||||||||| ||| |||||| ||||||||||||    
T  5832076 gtgtctctcttacttgtgtggttgttctagcctcgatgtagacggtcccc-aggctcccctca 5832015  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 12071720 - 12071678
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  12071720 gttgttctagcctcgatgtgaacggtcccctaagctcccctca 12071678  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 2378071 - 2378112
Alignment:
Q  155 cttgaagagggagcatgttgaatagatggactcacatttggg 196  Q
    ||||||| ||||||||| |||||| |||||||||||||||||    
T  2378071 cttgaagggggagcatgatgaataaatggactcacatttggg 2378112  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 10073681 - 10073604
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctc 267  Q
    |||||||||| ||||| ||||||||| | || ||| ||||||||||| ||||||||||| ||||   |||||||||||    
T  10073681 tttgggtaagagtgtggtgtctctctcactagtgtggttgttctagcatcgatgtggacggtccttcaggctcccctc 10073604  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 10911676 - 10911717
Alignment:
Q  207 tgtctctcttagtaatgtagttgttctagcctcgatgtggac 248  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  10911676 tgtctctcttactaatgttgttgttcaagcctcgatgtggac 10911717  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 66457 - 66267
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttcttgcggagaaaccagcaacggcggtatacgttccttgtg 103  Q
    |||||||||||| || ||||  ||||||||||| ||||||| | |  |||||||||||   |||||||||||||| ||||||||||||| | || |||||    
T  66457 gacccaacagtgatatcagagtcccggttcgacgaagggtacgaccgaggcagccggtccgttgcggagaaaccaacaacggcggtataagctcattgtg 66358  T
Q  104 ccggtccattgcagagaagccaac-acgaaaatacaagcaagctaagagctt---cttgaagagggagcatgttgaatagatggactcaca 190  Q
     | |||| |||  ||||||||| | |||   ||||||||||| |||||||||   ||||| | |||| |||| ||||||||||||||||||    
T  66357 tcagtcccttgtggagaagccagcaacggcgatacaagcaagataagagcttccgcttgatgggggaacatgatgaatagatggactcaca 66267  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 22077480 - 22077394
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttcttgcggagaaaccagcaacggcggta 90  Q
    ||||||||||||| | |||| ||| |||||||| ||||||| | | ||||||||||||   |||||||||||||||||||| |||||    
T  22077480 gacccaacagtggcatcagagcccaggttcgacgaagggtacgaccaaggcagccggtccgttgcggagaaaccagcaacgacggta 22077394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 22077814 - 22077734
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttcttgcggagaaaccagcaacg 84  Q
    ||||||||||||| | |||| ||| |||||||| ||||||||| | ||||||||||||   ||||||||||||||| ||||    
T  22077814 gacccaacagtggcatcagagcccaggttcgacgaagggtatgaccaaggcagccggtccgttgcggagaaaccagtaacg 22077734  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 32168727 - 32168686
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccct-aggctcccct 266  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32168727 gttgttctagcctcgatgtggacagtcccctaaggctcccct 32168686  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 50052009 - 50051971
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaaggg 42  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  50052009 gacccaacagtggtatcagagccccggttcgacaaaggg 50051971  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 24132051 - 24131999
Alignment:
Q  191 tttgggtaagtgtgtgtgtctctcttagtaatgtagttgttctagcctcgatgt 244  Q
    |||||||||||||| |||||||||| | || ||| |||||||||||||||||||    
T  24132051 tttgggtaagtgtg-gtgtctctctcactagtgtggttgttctagcctcgatgt 24131999  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 41759576 - 41759641
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    |||||||||| ||||| ||||||||||  | |||| ||||||||||||| ||||||||| ||||||    
T  41759576 tttgggtaagagtgtggtgtctctcttgcttatgtggttgttctagccttgatgtggacggtcccc 41759641  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 50052088 - 50052024
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    |||||||||| ||||| ||||||||||  | |||| ||||||||| ||||||||||||||||||||    
T  50052088 tttgggtaagagtgtggtgtctctcttgtttatgt-gttgttctaacctcgatgtggacagtcccc 50052024  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 3537628 - 3537589
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccct 266  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  3537628 gttgttctagcctcgatgtggacggtcccct-ggctcccct 3537589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 34364680 - 34364720
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggta 44  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  34364680 gacccaacagtggtatcagagccccggttcgacgaagggta 34364720  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 36608724 - 36608647
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctc 267  Q
    |||||||||| ||||| ||||||||| | || ||| ||||||||||||||||||||||| |||||| | |||||||||    
T  36608724 tttgggtaagagtgtggtgtctctctcactagtgtggttgttctagcctcgatgtggacggtcccccaagctcccctc 36608647  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 3271880 - 3271947
Alignment:
Q  191 tttgggtaagtgtgtgtgtctctct---tagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    |||||||||| ||||||||||||||   |  | |||| ||||||||||||||||||||||||||||||    
T  3271880 tttgggtaagagtgtgtgtctctctcgtttattatgtggttgttctagcctcgatgtggacagtcccc 3271947  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 23817744 - 23817679
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    |||||||||| ||||| ||||||||||  || ||| ||||||||||||||||||||||| ||||||    
T  23817744 tttgggtaagagtgtggtgtctctcttgctagtgtggttgttctagcctcgatgtggacggtcccc 23817679  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 54936289 - 54936353
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    |||||||||| ||||| ||||||||| | || ||| ||||||||||||||||||||||||||||||    
T  54936289 tttgggtaagagtgtggtgtctctctcacta-tgtggttgttctagcctcgatgtggacagtcccc 54936353  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 36629330 - 36629413
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctcactgac 273  Q
    |||||||||| ||||| ||||||||||  |  ||| ||||||||||||||||||||||| |||||  | |||||||||| ||||    
T  36629330 tttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcccacatgctcccctcaatgac 36629413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 39792923 - 39792845
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    |||||||||| ||||| ||||||||||  |  ||| ||||||||||||||||||||||| |||| ||  ||||||||||    
T  39792923 tttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcctctgagctcccctca 39792845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 55933187 - 55933113
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctccc 264  Q
    |||||||||| ||||| ||||||||||| |  |  |||||||||||||||||||||||| |||||| | ||||||    
T  55933187 tttgggtaagagtgtggtgtctctcttacttgtacagttgttctagcctcgatgtggacggtcccccaagctccc 55933113  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 39404147 - 39404191
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctcact 270  Q
    ||||||||||||||||||||||| ||||||   ||||||||||||    
T  39404147 gttgttctagcctcgatgtggacggtcccccgagctcccctcact 39404191  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 6500579 - 6500623
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctcact 270  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  6500579 gttgttctagcctcgatgtggacggtcccccaggctcccctcact 6500623  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 35150229 - 35150303
Alignment:
Q  51 aggcagccggtttcttgcggagaaaccagcaacggcggtatacgttccttgtgccggtccattgcagagaagcca 125  Q
    ||||||||||| | ||| |||||||||||||||| |||||||   |||||||| |||||| |||| |||||||||    
T  35150229 aggcagccggtctgttgtggagaaaccagcaacgacggtataaactccttgtgtcggtcctttgcggagaagcca 35150303  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 6500955 - 6500995
Alignment:
Q  230 ttctagcctcgatgtggacagtcccctaggctcccctcact 270  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  6500955 ttctagcctcgatgtggacggtcccccaggctcccctcact 6500995  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 3295064 - 3295002
Alignment:
Q  206 gtgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    ||||||||||| ||  ||| |||||| |||||||||||||||||||||||   ||||||||||    
T  3295064 gtgtctctcttggttgtgtggttgttgtagcctcgatgtggacagtccccctcgctcccctca 3295002  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 13415998 - 13415940
Alignment:
Q  134 atacaagcaagctaagagcttc---ttgaagagggagcatgttgaatagatggactcaca 190  Q
    ||||||||||| ||||||||||   |||||| ||||||||| ||||||||||||||||||    
T  13415998 atacaagcaag-taagagcttccgcttgaagggggagcatgctgaatagatggactcaca 13415940  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 37991042 - 37990967
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccc 265  Q
    |||||||||| ||||| ||||||||||  | |||| ||||||||||||||||||||||| |||||  |||||||||    
T  37991042 tttgggtaagagtgtggtgtctctcttgcttatgtggttgttctagcctcgatgtggacggtccctcaggctcccc 37990967  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 21832374 - 21832345
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccc 255  Q
    ||||||||||||||||||||||||||||||    
T  21832374 gttgttctagcctcgatgtggacagtcccc 21832345  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 22304368 - 22304425
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggt 61  Q
    ||||||||||||||| |||| |||||||||||| ||||||| | |  |||||||||||    
T  22304368 gacccaacagtggtatcagagccccggttcgacgaagggtacgaccgaggcagccggt 22304425  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 22304489 - 22304548
Alignment:
Q  134 atacaagcaagctaagagcttc---ttgaagagggagcatgttgaatagatggactcaca 190  Q
    ||||||||||  ||||||||||   |||||| ||||||||| ||||||||||||||||||    
T  22304489 atacaagcaaagtaagagcttccgcttgaagggggagcatgatgaatagatggactcaca 22304548  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 22304322 - 22304370
Alignment:
Q  226 gttgttctagcctcgatgtggacagt-cccctaggctcccctcactgac 273  Q
    ||||||||||||||||||||||| || |||||||  |||||||||||||    
T  22304322 gttgttctagcctcgatgtggacggtccccctagcttcccctcactgac 22304370  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 22304698 - 22304746
Alignment:
Q  226 gttgttctagcctcgatgtggacagt-cccctaggctcccctcactgac 273  Q
    |||||||||| ||||||||||||||| |||||||  |||||||||||||    
T  22304698 gttgttctagtctcgatgtggacagtccccctagcttcccctcactgac 22304746  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 3673161 - 3673236
Alignment:
Q  191 tttgggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccc 265  Q
    ||||| |||| ||||| ||||||||||| || ||| ||||||||||||||||||||||| ||||||  ||||||||    
T  3673161 tttggctaagagtgtgatgtctctcttactagtgtggttgttctagcctcgatgtggacggtccccctggctcccc 3673236  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 12349150 - 12349194
Alignment:
Q  222 tgtagttgttctagcctcgatgtggacagtcccctaggctcccct 266  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||    
T  12349150 tgtagttgttctagcctcgatatggacagtccctcaggctcccct 12349194  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 42514962 - 42514996
Alignment:
Q  160 agagggagcatgttgaatagatggactcacatttg 194  Q
    |||||||||||| ||||||||||||||||||||||    
T  42514962 agagggagcatgatgaatagatggactcacatttg 42514996  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 14745696 - 14745667
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccc 255  Q
    ||||||||||||||||||||||||||||||    
T  14745696 gttgttctagcctcgatgtggacagtcccc 14745667  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 41283504 - 41283460
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctcact 270  Q
    ||||||||||||| ||||||||| |||||| | ||||||||||||    
T  41283504 gttgttctagccttgatgtggacggtcccccatgctcccctcact 41283460  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 1085681 - 1085603
Alignment:
Q  191 tttgggtaagtgtgtgt-gtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    |||||||||| |||||  |||||||||| |  ||| ||||||||||||||||||||||| ||||||  |||||||||||    
T  1085681 tttgggtaagagtgtggcgtctctcttacttgtgtggttgttctagcctcgatgtggacggtccccctggctcccctca 1085603  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 30253699 - 30253741
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||    
T  30253699 gttgttcaagcctcgatgtggactgtcccccaggctcccctca 30253741  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 30441214 - 30441255
Alignment:
Q  226 gttgttctagcctcgatgtggacagtcccctaggctcccctc 267  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  30441214 gttgttctagcctcgatgtggacagtcaccttggctcccctc 30441255  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 1014225 - 1014144
Alignment:
Q  8 caacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttcttgcggagaaaccagcaacggcggta 90  Q
    ||||||||||| |||| |||||||||||| ||||||| | || |||||||||| |  ||||| ||||| | ||||||||||||    
T  1014225 caacagtggtatcagagccccggttcgacgaagggtacgactgaggcagccgg-tcgttgcgcagaaagccgcaacggcggta 1014144  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 9309451 - 9309512
Alignment:
Q  194 gggtaagtgtgtg-tgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccc 255  Q
    ||||||| ||||| ||||||||| |||| ||| ||||||||||||||||||||||| ||||||    
T  9309451 gggtaagagtgtggtgtctctctcagta-tgtggttgttctagcctcgatgtggacggtcccc 9309512  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 41129097 - 41129159
Alignment:
Q  206 gtgtctctcttagtaatgtagttgttctagcctcgatgtggacagtcccctaggctcccctca 268  Q
    |||||||||||| |  ||| ||||||| | ||||||||||||| |||||| ||||||||||||    
T  41129097 gtgtctctcttacttgtgtggttgttcaaacctcgatgtggacggtcccccaggctcccctca 41129159  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 147624 - 147664
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggta 44  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  147624 gacccaacagtgatatcagagccccggttcgacaaagggta 147664  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 18371978 - 18371895
Alignment:
Q  4 gacccaacagtggtagcagatccccggttcgacaaagggtatggctaaggcagccggtttctt-gcggagaaaccagcaacggcg 87  Q
    ||||||||||||||| |||| ||  |||||||||||||||| | |  ||||||||||||  || ||||||||||||||| |||||    
T  18371978 gacccaacagtggtatcagagcct-ggttcgacaaagggtacgaccgaggcagccggttcgtttgcggagaaaccagcagcggcg 18371895  T

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Target: scaffold0702 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 355 - 314
Alignment:
Q  155 cttgaagagggagcatgttgaatagatggactcacatttggg 196  Q
    ||||||| ||||||||| |||||| |||||||||||||||||    
T  355 cttgaagggggagcatgatgaataaatggactcacatttggg 314  T

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