View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12212_low_1 (Length: 465)

Name: NF12212_low_1
Description: NF12212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12212_low_1
NF12212_low_1
[»] chr4 (17 HSPs)
chr4 (12-465)||(1513551-1514005)
chr4 (12-465)||(1489508-1489962)
chr4 (94-465)||(1508150-1508521)
chr4 (258-457)||(1537922-1538121)
chr4 (262-465)||(12121604-12121807)
chr4 (180-292)||(1530103-1530215)
chr4 (214-465)||(558197-558450)
chr4 (180-395)||(1517716-1517931)
chr4 (297-430)||(1534173-1534306)
chr4 (203-395)||(1496136-1496328)
chr4 (15-83)||(12121805-12121873)
chr4 (349-438)||(1552944-1553033)
chr4 (417-465)||(8184177-8184225)
chr4 (416-450)||(644734-644768)
chr4 (416-457)||(570254-570295)
chr4 (417-457)||(1524638-1524678)
chr4 (147-219)||(55909321-55909392)
[»] chr2 (2 HSPs)
chr2 (142-457)||(44575650-44575972)
chr2 (59-91)||(44576001-44576033)
[»] chr3 (1 HSPs)
chr3 (359-465)||(51113928-51114034)
[»] chr8 (2 HSPs)
chr8 (416-450)||(28246455-28246489)
chr8 (416-457)||(21235461-21235502)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 1514005 - 1513551
Alignment:
Q  12 ctgtgctacaaaagtatgcaaaaccnnnnnnn-tgctactgatgaggcaaagtgatgaaaaacaatacaatttgaaactgcaagtaatatcatactcaac 110  Q
    |||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514005 ctgtgctacaaaagtatgcaaaaccaaaaaaaatgctactaatgaggcaaagtgatgaaaaacaatacaatttgaaactgcaagtaatatcatactcaac 1513906  T
Q  111 cgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaat 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513905 cgcttgctttacttagggaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaat 1513806  T
Q  211 ttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513805 ttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatc 1513706  T
Q  311 tctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1513705 tctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaac 1513606  T
Q  411 aatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513605 aatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 1513551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 1489962 - 1489508
Alignment:
Q  12 ctgtgctacaaaagtatgcaaaaccnnnnnnn-tgctactgatgaggcaaagtgatgaaaaacaatacaatttgaaactgcaagtaatatcatactcaac 110  Q
    |||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489962 ctgtgctacaaaagtatgcaaaaccaaaaaaaatgctactaatgaggcaaagtgatgaaaaacaatacaatttgaaactgcaagtaatatcatactcaac 1489863  T
Q  111 cgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaat 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489862 cgcttgctttacttagggaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaat 1489763  T
Q  211 ttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489762 ttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatc 1489663  T
Q  311 tctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaac 410  Q
    |||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |  ||    
T  1489662 tctctgtcgctgaattgataatcatatggagttgataactttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccac 1489563  T
Q  411 aatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 465  Q
    |   |||||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  1489562 acattttcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcac 1489508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 94 - 465
Target Start/End: Complemental strand, 1508521 - 1508150
Alignment:
Q  94 gtaatatcatactcaaccgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaat 193  Q
    ||||||| | |||||||||||||| ||||||| ||||||||||| |||||| |||| |||||||||| |||| |||||||||||||||||| ||||||||    
T  1508521 gtaatataacactcaaccgcttgccttacttaaggaaatatcatgcaaaaaccgatgagtaaatacatatttgcaagttgacatttaaaaatagagcaat 1508422  T
Q  194 atctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaa 293  Q
    || |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  1508421 atttcatagaactaaatttcaaaacaaaaacatcttacattcaaaagttcaaactacaagaaagcacttttagaatactagcaaacaatgcatccttgac 1508322  T
Q  294 gtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatc 393  Q
    |||||||| | ||||||||||| ||||||||| ||||||||   |||  |  ||  ||||| |||||||||||||||||||||||||||||||||| |||    
T  1508321 gtgataagtgttccatctctctatcgctgaaacgataaccaagaggaattgttatttttctcaacgatggccttgaaaatatcaatgaggcaagaacatc 1508222  T
Q  394 accattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 465  Q
    ||||   || |||| || ||||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  1508221 accacgtaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcac 1508150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 258 - 457
Target Start/End: Complemental strand, 1538121 - 1537922
Alignment:
Q  258 cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa 357  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| |  ||||||||||||    
T  1538121 cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa 1538022  T
Q  358 cgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcaca 457  Q
    |||||||||||||||||||||||||| ||||| |||| ||| ||||| |  |||   |||||||||||||||||| ||||| ||||||||||||||||||    
T  1538021 cgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcaca 1537922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 262 - 465
Target Start/End: Complemental strand, 12121807 - 12121604
Alignment:
Q  262 tttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgat 361  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||| | ||||| |||||| || ||||| |   |||||||| || |||    
T  12121807 tttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgat 12121708  T
Q  362 ggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagct 461  Q
    |||||||||||||||||||||||||||| ||||| || ||||| |  |||||||||||||| ||||||||| ||||||||||||||||||| |||| |||    
T  12121707 ggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgct 12121608  T
Q  462 tcac 465  Q
    ||||    
T  12121607 tcac 12121604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 1530215 - 1530103
Alignment:
Q  180 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 279  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||| ||||    
T  1530215 aaaaacagagaaatatctcatagaagtaaatttgaaaacaaaaacatcttacatgcaagagttcaaactacaagaaatcacttttagaatactaggaaac 1530116  T
Q  280 aatgcatccttga 292  Q
    |||||||||||||    
T  1530115 aatgcatccttga 1530103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 465
Target Start/End: Original strand, 558197 - 558450
Alignment:
Q  214 aaaacaaaaacatcttacattaaaaa--gttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatct 311  Q
    |||||||||||||| |||||| || |  ||||||||||||  ||  |||||||||| ||||||||  |||||||||||| | |  |||||||||||||||    
T  558197 aaaacaaaaacatcctacatttaagatcgttcaaactacagcaatgcacttttagattactagcagccaatgcatcctttacgcaataagagctccatct 558296  T
Q  312 ctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaaca 411  Q
    |||||||||||||| || ||  |||||||| |  ||||||||| || ||||| ||||||| ||| |||||| |||||  || ||||| || ||||||       
T  558297 ctctgtcgctgaaacgacaaggatatggagttgttaactttctcaatgatggtcttgaaagtattaatgagacaagatcatgaccatgcattttagagat 558396  T
Q  412 atatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 465  Q
      || |||||||||| ||||||| ||||||||| |||||||||||| |||||||    
T  558397 gcatctcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcac 558450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 395
Target Start/End: Complemental strand, 1517931 - 1517716
Alignment:
Q  180 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 279  Q
    ||||||| || | |||||||||||| ||||||  ||||||||||||||||| ||| || |||||||||  ||   || || |||||||||||||| ||||    
T  1517931 aaaaacaaagtagtatctcatagaaataaattcgaaaacaaaaacatcttaaatttaatagttcaaacatcagtgaagcatttttagaatactagtaaac 1517832  T
Q  280 aatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaat 379  Q
    | | ||||||||  |  |||| || ||||||||  ||||||||||| |||||  || ||||| |  ||  ||| | || ||||||||||| |||||||||    
T  1517831 attacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatgatggccttgacaatatcaat 1517732  T
Q  380 gaggcaagaatatcac 395  Q
    ||| |||||| |||||    
T  1517731 gagacaagaacatcac 1517716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 430
Target Start/End: Complemental strand, 1534306 - 1534173
Alignment:
Q  297 ataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcacc 396  Q
    ||||||| ||||||||  ||||||||||| |||||| || ||||| |  ||  ||| | || ||||||||||| ||||||||||||||||||| |||||     
T  1534306 ataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttgacaatatcaatgaggcaagaacatcact 1534207  T
Q  397 attcactttagaacaatatttcaaattgatctct 430  Q
     ||||| ||| |||||||| |||||| |||||||    
T  1534206 tttcacattacaacaatatatcaaatcgatctct 1534173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 1496328 - 1496136
Alignment:
Q  203 aagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataaga 302  Q
    |||||||||| |||||| |||||||||||||| || |||||||||  ||   || || ||||||| |||||| ||||| | ||||||||  |  ||||||    
T  1496328 aagtaaatttgaaaacagaaacatcttacatttaagagttcaaacatcagtgaagcatttttagattactagtaaacattacatccttggcgcaataaga 1496229  T
Q  303 gctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcac 395  Q
    | ||||||||  ||||| ||||  |||||| || ||||| |  ||  ||| | |||||||||||||| |||||||||||| |||||| |||||    
T  1496228 gttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaacgatggccttgacaatatcaatgagacaagaacatcac 1496136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 12121873 - 12121805
Alignment:
Q  15 tgctacaaaagtatgcaaaaccnnnnnnntgctactgatgaggcaaagtgatgaaaaacaatacaattt 83  Q
    |||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||    
T  12121873 tgctacaaaagtatgcaaaacaaaatagatgctactaatgaggcaaagtgatgaaaaacaatacaattt 12121805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 1553033 - 1552944
Alignment:
Q  349 ctttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttg 438  Q
    |||||| || |||||||||||||||| |||||| |||| || ||||  || |||||||  ||||  |||||||||||||||||| |||||    
T  1553033 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 1552944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 8184225 - 8184177
Alignment:
Q  417 tcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcac 465  Q
    ||||||||||| || ||||||||||||| |||||||||||| |||||||    
T  8184225 tcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcac 8184177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 644734 - 644768
Alignment:
Q  416 ttcaaattgatctctctcagttgtgtgcatttttc 450  Q
    ||||||| |||||||||||||||||||||||||||    
T  644734 ttcaaatcgatctctctcagttgtgtgcatttttc 644768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 570254 - 570295
Alignment:
Q  416 ttcaaattgatctctctcagttgtgtgcatttttctagcaca 457  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  570254 ttcaaattgatctccctcagttgtgtgcagttttctaccaca 570295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 1524678 - 1524638
Alignment:
Q  417 tcaaattgatctctctcagttgtgtgcatttttctagcaca 457  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  1524678 tcaaattaatctctctcagttgtgtgcagttttctatcaca 1524638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 55909392 - 55909321
Alignment:
Q  147 gataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaaca 219  Q
    |||||||||||||||||||  ||||||||||||||| | | || ||| |||| ||||||||||| | ||||||    
T  55909392 gataagtaaatacacatttgtaagttgacatttaaaga-aaagtaatttctcttagaagtaaatcttaaaaca 55909321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 142 - 457
Target Start/End: Complemental strand, 44575972 - 44575650
Alignment:
Q  142 aaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaa-acaaaaacatcttacattaaaaag 240  Q
    |||| ||| |||||||| ||||||  ||||| |||||||||| || || |||||||||||||||||||||||||  | |||||||||||||||| || ||    
T  44575972 aaattgatgagtaaataaacatttgtaagtttacatttaaaa-caaagtaatatctcatagaagtaaatttaaagtaaaaaaacatcttacatttaagag 44575874  T
Q  241 ttcaaactacaagaaatcacttttagaatactagcaaacaatgcatcc-------ttgaagtgataagagctccatctctctgtcgctgaaatgataacc 333  Q
    ||||||||||||  || || |||| |||||||||||||||||||||||       |||| | |||||||| |||||||||  ||| ||||||| || ||     
T  44575873 ttcaaactacaatgaagcaattttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcactgaaatcatcacg 44575774  T
Q  334 atatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctc 433  Q
    |||||||  |  ||||||||| || ||||||||||||| |||||| |||||||||| ||||| || ||| |||  ||||| | ||||||||| |||||||    
T  44575773 atatggaattgttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctctc 44575674  T
Q  434 agttgtgtgcatttttctagcaca 457  Q
     |||||||||| ||||||| ||||    
T  44575673 ggttgtgtgcagttttctaccaca 44575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 44576033 - 44576001
Alignment:
Q  59 aaagtgatgaaaaacaatacaatttgaaactgc 91  Q
    ||||||||||||| |||||||||||||||||||    
T  44576033 aaagtgatgaaaagcaatacaatttgaaactgc 44576001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 51114034 - 51113928
Alignment:
Q  359 gatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaa 458  Q
    ||||||||||||||||||| |||||||| || || | ||| ||||||| |||||   || ||||| |||||||| |||| |||||||||||||| ||||     
T  51114034 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacat 51113935  T
Q  459 gcttcac 465  Q
    |||||||    
T  51113934 gcttcac 51113928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 28246489 - 28246455
Alignment:
Q  416 ttcaaattgatctctctcagttgtgtgcatttttc 450  Q
    |||||||||| ||||||||||||||||||||||||    
T  28246489 ttcaaattgacctctctcagttgtgtgcatttttc 28246455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 21235461 - 21235502
Alignment:
Q  416 ttcaaattgatctctctcagttgtgtgcatttttctagcaca 457  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  21235461 ttcaaattgatctccctcagttgtgtgcagttttctaccaca 21235502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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