View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12213_high_1 (Length: 375)
Name: NF12213_high_1
Description: NF12213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12213_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 39029321 - 39028966
Alignment:
| Q |
1 |
cttgtagtagaagagttcctttcaaagctatggatcatggaaatgaatatctatcttcgatgttcaagaagaaaaacaatggagctgcaccaagttttat |
100 |
Q |
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| T |
39029321 |
cttgtagtagaagagttcctttcaaagctatggatcatggaaatgaatatctatcttcgatgttcaagaa---aaacaatggagctgcaccaagttttgt |
39029225 |
T |
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| Q |
101 |
tttgattatcattgatgcaaatgcaggaccattttctaagctttgtaagattgtgtcaaacttcaagaaagatcttctcaatcctagtaaagttgtttgg |
200 |
Q |
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| T |
39029224 |
tctgattatcattgatgcaaatgcaggaccattttctaagctttgtaagattgtgtcaaacttcaagaaagatcttctcaatcctagtaaagttgtttgg |
39029125 |
T |
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| Q |
201 |
ttggaaaagccttttgagagtagtgttgattaccaagcaattgatcaagatgatattgtgatatcaaaaccatttcatggtagtagattgttccaagtta |
300 |
Q |
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| T |
39029124 |
ttggaaaagccttttgagagtagtgttgattaccaagcaattgatcaagatgataatgtgatatcaaaaccatttcatggtagtagattgttccaagtta |
39029025 |
T |
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| Q |
301 |
ttaagcttattcctgagtttggtggtagttggataagcagttctagtaaaccaagaaat |
359 |
Q |
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| T |
39029024 |
ttaagcttcttcctgagtttggtggtagttggataagcaattctagtaaaccaagaaat |
39028966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 40896102 - 40896023
Alignment:
| Q |
239 |
aattgatcaagatgatattgtgatatcaaaaccatttcatggtagtagattgttccaagttattaagcttattcctgagt |
318 |
Q |
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| T |
40896102 |
aattgatcaaaatgacattgtcatatcgaaaccatttcacggtagtcgtttgttccaagtcataatgcttcttcctgagt |
40896023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 6996375 - 6996296
Alignment:
| Q |
239 |
aattgatcaagatgatattgtgatatcaaaaccatttcatggtagtagattgttccaagttattaagcttattcctgagt |
318 |
Q |
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| T |
6996375 |
aattgatcaaaacgacattgtcatatcgaaaccatttcacggtagtcgtttgttccaagtcataatgcttcttcctgagt |
6996296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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