View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12213_high_3 (Length: 294)

Name: NF12213_high_3
Description: NF12213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12213_high_3
NF12213_high_3
[»] chr7 (3 HSPs)
chr7 (12-279)||(2402543-2402809)
chr7 (120-189)||(41965111-41965180)
chr7 (121-189)||(24874559-24874627)
[»] chr8 (3 HSPs)
chr8 (56-188)||(12643973-12644105)
chr8 (144-188)||(9277196-9277240)
chr8 (144-188)||(31713396-31713440)
[»] chr1 (2 HSPs)
chr1 (12-189)||(39682318-39682494)
chr1 (113-189)||(26240844-26240920)
[»] chr2 (2 HSPs)
chr2 (12-188)||(2656356-2656532)
chr2 (144-188)||(4879056-4879100)
[»] chr5 (1 HSPs)
chr5 (144-182)||(39467643-39467681)
[»] chr4 (1 HSPs)
chr4 (113-182)||(47156639-47156708)
[»] chr3 (1 HSPs)
chr3 (144-188)||(50414467-50414511)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 2402809 - 2402543
Alignment:
Q  12 cgttcactgcagaatttcagtgagttgggaagaaatataggcaggattgtgtgtggacatatgcacatattttcaattttatttttaggaactttgtacc 111  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  2402809 cgttctctgcagaatttcagtgagttgggaagaaatacaggcaggattgtgtgtggacatatgtagatattttcaattttatttttaggaactttgtacc 2402710  T
Q  112 cttgattaaatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacctccataataatgtcgaattccat 211  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  2402709 cttgattaaatctgacggtattttgttggtgttcc-ccggtgagggacttgataaaacccttatcctagaaaccacctccataataatgtcgaattccat 2402611  T
Q  212 aatatgtatgctatctttatgaaatagtcatccannnnnnngaatcaagtctgaaatcgacatctgtg 279  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  2402610 aatatgtatgctatctttatgaaatagtcatccatttttttgaatcaagtctgaaatcgacatctgtg 2402543  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 41965180 - 41965111
Alignment:
Q  120 aatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacct 189  Q
    ||||| ||||||||| ||| ||| |||||| ||||||||||| ||   ||||||||||||||| ||||||    
T  41965180 aatctaacggtatttccttcgtggtccaccaatgagggacttaattggaccctcaccctagaatccacct 41965111  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 24874559 - 24874627
Alignment:
Q  121 atctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacct 189  Q
    |||| ||||||||||  | ||| |||||||||||||||| | ||  |||||||||||||||| ||||||    
T  24874559 atctaacggtatttttctcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccacct 24874627  T

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Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 12643973 - 12644105
Alignment:
Q  56 gattgtgtgtggacatatgcacatattttcaattttatttttaggaactttgtacccttgattaaatctgacggtattttcttggtgttccaccgatgag 155  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643973 gattgtgtgtggacatatgtaaatattttcaattttatttttagaaactttgtacccttgattaaatctgacggtattttcttggtgttccaccgatgag 12644072  T
Q  156 ggacttgataaaaccctcaccctagaaaccacc 188  Q
    |||||||||| ||||||||||||||||||||||    
T  12644073 ggacttgatagaaccctcaccctagaaaccacc 12644105  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 9277240 - 9277196
Alignment:
Q  144 tccaccgatgagggacttgataaaaccctcaccctagaaaccacc 188  Q
    ||||||||||||||||||| || |||||||||||||||| |||||    
T  9277240 tccaccgatgagggacttgttagaaccctcaccctagaatccacc 9277196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 31713440 - 31713396
Alignment:
Q  144 tccaccgatgagggacttgataaaaccctcaccctagaaaccacc 188  Q
    ||||||||||||||||||| || |||| ||||||||||| |||||    
T  31713440 tccaccgatgagggacttgttagaaccttcaccctagaatccacc 31713396  T

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Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 39682494 - 39682318
Alignment:
Q  12 cgttcactgcagaatttcagtgagttgggaagaaatataggcaggattgtgtgtggacatatgcacatattttcaattttatttttaggaactttgtacc 111  Q
    ||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||| |    
T  39682494 cgttctctgcataattttagtgagtcgggaagaaatataggcaggattgtgtgtggacataggtagatattctcaattttatttttaggaactttgta-c 39682396  T
Q  112 cttgattaaatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacct 189  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||| | |||||||||||||| ||||||    
T  39682395 cttgattaaatctgagggtattttcttggtgtttcaccggtgaaggacttgatagagccctcaccctagaatccacct 39682318  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 26240844 - 26240920
Alignment:
Q  113 ttgattaaatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacct 189  Q
    |||||| ||||  |||||||||||||  || ||||||| |||||||||| ||  |||||||||||||||| ||||||    
T  26240844 ttgattcaatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

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Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 2656356 - 2656532
Alignment:
Q  12 cgttcactgcagaatttcagtgagttgggaagaaatataggcaggattgtgtgtggacatatgcacatattttcaattttatttttaggaactttgtacc 111  Q
    ||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||   ||||| ||||||||||||| ||||||||||||||    
T  2656356 cgttctctgcagaattttagtgagtcgggaagaaatatagccaggattgtgtgtggatatatgtggatattctcaattttattttcaggaactttgtacc 2656455  T
Q  112 cttgattaaatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaaaccacc 188  Q
    |||||||||||| || |||||||||||||||||  ||||||||||||||||||| | ||||||| |||||| |||||    
T  2656456 cttgattaaatccgagggtattttcttggtgtttaaccgatgagggacttgatagagccctcactctagaatccacc 2656532  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 4879100 - 4879056
Alignment:
Q  144 tccaccgatgagggacttgataaaaccctcaccctagaaaccacc 188  Q
    ||||||||||||||||||| || |||| ||||||||||| |||||    
T  4879100 tccaccgatgagggacttgttagaaccttcaccctagaatccacc 4879056  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 39467643 - 39467681
Alignment:
Q  144 tccaccgatgagggacttgataaaaccctcaccctagaa 182  Q
    |||||||||||||||||| || |||||||||||||||||    
T  39467643 tccaccgatgagggacttaattaaaccctcaccctagaa 39467681  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 47156708 - 47156639
Alignment:
Q  113 ttgattaaatctgacggtattttcttggtgttccaccgatgagggacttgataaaaccctcaccctagaa 182  Q
    |||||||||||  | ||| |||| | |||| |||||||||||||||||| ||  ||||||||||||||||    
T  47156708 ttgattaaatcaaatggtgttttttgggtgctccaccgatgagggacttaattgaaccctcaccctagaa 47156639  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 50414467 - 50414511
Alignment:
Q  144 tccaccgatgagggacttgataaaaccctcaccctagaaaccacc 188  Q
    ||||| ||||||||||||| |||||||||||||||| || |||||    
T  50414467 tccactgatgagggacttgttaaaaccctcaccctaaaatccacc 50414511  T

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