View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12213_low_6 (Length: 234)
Name: NF12213_low_6
Description: NF12213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12213_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 20628979 - 20629135
Alignment:
| Q |
64 |
tttggtgttacttttacttttccttctagaagatagcatgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatc |
163 |
Q |
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| T |
20628979 |
tttggtgttacctttacttttccttctagaagatagcatgtcactttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatc |
20629078 |
T |
|
| Q |
164 |
aaaataggaatacactttcaggaaggggttttaaaccaataaatcataatgagcaca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20629079 |
aaaataggaatacactttcaggaaggggttttaaaccaataaatcataatgagcaca |
20629135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 12027603 - 12027440
Alignment:
| Q |
1 |
gtcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||| | |
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| T |
12027603 |
gtcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttgctccatttggtgttaccttaacttctccttctagaagataac |
12027504 |
T |
|
| Q |
101 |
atgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatca |
164 |
Q |
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||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
12027503 |
atgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgttacatca |
12027440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 12034523 - 12034360
Alignment:
| Q |
1 |
gtcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagc |
100 |
Q |
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| T |
12034523 |
gtcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttgctccatttggtgttaccttaacttctccttctagaagataac |
12034424 |
T |
|
| Q |
101 |
atgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatca |
164 |
Q |
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||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
12034423 |
atgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgttacatca |
12034360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 20658355 - 20658517
Alignment:
| Q |
2 |
tcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||| || |
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| T |
20658355 |
tcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttgctccatttggtgttaccttaacttctccttctagaagataaca |
20658454 |
T |
|
| Q |
102 |
tgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatca |
164 |
Q |
| |
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|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
20658455 |
tgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgttacatca |
20658517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 20600875 - 20601007
Alignment:
| Q |
3 |
catccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagcat |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
20600875 |
catccctttaggaaacacaaccaagtcaccagcaccaaattcaactaactcatttgctccatttggtgttaccttaacttttccttctagaagataacat |
20600974 |
T |
|
| Q |
103 |
gtctctttgaaatcataagtccatggaaatttg |
135 |
Q |
| |
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||||||||| |||||||||||||||| |||||| |
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| T |
20600975 |
gtctctttggaatcataagtccatgggaatttg |
20601007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 20611990 - 20612157
Alignment:
| Q |
2 |
tcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
20611990 |
tcatccctttaggaaacacaaccaagtcaccagcgccaaattcaactgattcatttgctccatttggtgttc--ttcacttttccttctagaagatagaa |
20612087 |
T |
|
| Q |
102 |
tgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgttacatcaaaatagg |
171 |
Q |
| |
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||| |||||| |||||||||| |||| |||||| ||||||||||||||||||| | ||||||||||||| |
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| T |
20612088 |
tgtttctttggaatcataagttgatgggaatttgcttggaggacaaccccatctttcacatcaaaatagg |
20612157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 20605975 - 20606069
Alignment:
| Q |
2 |
tcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaaga |
96 |
Q |
| |
|
||||| |||||||||||||||| |||||| || |||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
20605975 |
tcatctctttaggaaacacaacaaagtcaacagcaccaaattcaactgactcatttactccatttggtgttaccttcacttttccttctagaaga |
20606069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20628721 - 20628791
Alignment:
| Q |
1 |
gtcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgtt |
72 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
20628721 |
gtcatccctttaggaaacacaac-aagtcaccaacactaaattcaactgactcatttgctccatttggtgtt |
20628791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 35114317 - 35114266
Alignment:
| Q |
2 |
tcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactc |
53 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
35114317 |
tcatgcctttaggaaacacaaccaagtcaccaataccaaattcaactgactc |
35114266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 12054861 - 12054824
Alignment:
| Q |
183 |
aggaaggggttttaaaccaataaatcataatgagcaca |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
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|
| T |
12054861 |
aggaaggggttttaaaccaataaattataatgagcaca |
12054824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 34300837 - 34300681
Alignment:
| Q |
2 |
tcatccctttaggaaacacaaccaagtcaccaacaccaaattcaattgactcatttgctccatttggtgttacttttacttttccttctagaagatagca |
101 |
Q |
| |
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|||| ||||| || || |||||||| |||||| || || ||||| || |||||| || ||| | || || || || ||||||||||| | ||||||||| |
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| T |
34300837 |
tcattccttttgggaaaacaaccaaatcaccagcagaaatttcaactgcctcattagccccactaggagtgaccttcacttttccttccaaaagatagca |
34300738 |
T |
|
| Q |
102 |
tgtctctttgaaatcataagtccatggaaatttgtttggaggacaaccccatctgtt |
158 |
Q |
| |
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||||||| | |||||| |||||||| || || ||||||| || ||||||||||| |
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|
| T |
34300737 |
tgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgtt |
34300681 |
T |
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