View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_10 (Length: 381)
Name: NF12214_high_10
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 39242510 - 39242855
Alignment:
| Q |
12 |
agaacctgtggcggtacagtggatttggttaccctcaagaaggcttaaattgatatcattgtaccactttttgttgttttcttgtgtttcagcaacacaa |
111 |
Q |
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| T |
39242510 |
agaacctatggcggtacaatggatttggttaccctcaagaaggcttaaattgatatcattgtaccactttttgttgttttcttgtgtttcagcaacacaa |
39242609 |
T |
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| Q |
112 |
gttgatttacatgtataatgtctgtaatatataatggaaatgaaacacaggaagacttttgtagttattgtaaagaaaaaaggaagacttttgtagttat |
211 |
Q |
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| T |
39242610 |
gttgatttacatgtataatgtctgtaatatataatggaaatgaaacacaggaagacttttgtagttattgtaaagaaaaaaggaagacttttgtagttat |
39242709 |
T |
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| Q |
212 |
tactgcactttgctctttaaactccaacatctctaaattaatcaaatcacgttctcatcaatgtttttactagggtctctttgaatacgtttgtcacatt |
311 |
Q |
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| T |
39242710 |
tactgcactttgctctttaaactccaacatctctaaattaatcaaatcacgttctcatcaatgtttttactagggtctctttgaatacgtttgtcacatt |
39242809 |
T |
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| Q |
312 |
atgtgacactgattttggacacagtaaaattgtgacaccttttgag |
357 |
Q |
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| T |
39242810 |
atgtgacactgattttggacacagtaaaattgtgacaccttttgag |
39242855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 808902 - 809020
Alignment:
| Q |
31 |
tggatttggttaccctcaagaaggcttaaattgata--------tcattgtaccactttttgttgttttcttgtgtttcagcaacacaagttgatttaca |
122 |
Q |
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| T |
808902 |
tggatttggttaccctcaagaaggcataaattgataataatgtatcattgtacctattttagttgttttcctgtgttccag-aatagaagttgatttaca |
809000 |
T |
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| Q |
123 |
tgtataatgtctgtaatata |
142 |
Q |
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| T |
809001 |
tgtataatgtttgtaatata |
809020 |
T |
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