View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_high_12 (Length: 348)

Name: NF12214_high_12
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12214_high_12
NF12214_high_12
[»] chr5 (16 HSPs)
chr5 (188-298)||(1163145-1163252)
chr5 (18-99)||(1163360-1163441)
chr5 (20-99)||(3299886-3299965)
chr5 (20-99)||(3392779-3392858)
chr5 (200-280)||(40418870-40418950)
chr5 (20-90)||(38988070-38988140)
chr5 (303-340)||(1163072-1163109)
chr5 (20-84)||(40418648-40418712)
chr5 (157-189)||(1163270-1163302)
chr5 (200-244)||(38988292-38988336)
chr5 (212-280)||(39880427-39880495)
chr5 (304-340)||(40418993-40419029)
chr5 (20-67)||(39880185-39880232)
chr5 (223-280)||(3300086-3300147)
chr5 (223-280)||(3392979-3393040)
chr5 (30-90)||(39726803-39726863)
[»] chr4 (4 HSPs)
chr4 (200-280)||(25911695-25911775)
chr4 (20-90)||(44444435-44444505)
chr4 (20-90)||(25911942-25912012)
chr4 (304-340)||(25911593-25911629)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 1163252 - 1163145
Alignment:
Q  188 tttatgtttatcagaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccatttactactt 287  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||    
T  1163252 tttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatt---tactt 1163156  T
Q  288 tcctgtcttcc 298  Q
    |||||||||||    
T  1163155 tcctgtcttcc 1163145  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 1163441 - 1163360
Alignment:
Q  18 atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1163441 atgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc 1163360  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 3299886 - 3299965
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 99  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3299886 gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3299965  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 3392779 - 3392858
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 99  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3392779 gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3392858  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 40418870 - 40418950
Alignment:
Q  200 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 280  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40418870 agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcaccattt 40418950  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 38988070 - 38988140
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 90  Q
    ||||||||| | || |||||||||||| ||||||| |||||||||||||||  |||||||||||| |||||    
T  38988070 gatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaacaacaa 38988140  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 1163109 - 1163072
Alignment:
Q  303 gtaagcagctaatatgcattggtttgatcttctctgct 340  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1163109 gtaagcagctaatatgcattggtttgatcttctctgct 1163072  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 40418648 - 40418712
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaa 84  Q
    ||||||||| |||| |||||||||||| ||||||| |||| ||||||||||  ||||||||||||    
T  40418648 gatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaa 40418712  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 1163302 - 1163270
Alignment:
Q  157 cgataacaagaacaacttactttgttgcaattt 189  Q
    |||||||||||||||||||||||||||||||||    
T  1163302 cgataacaagaacaacttactttgttgcaattt 1163270  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
Q  200 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgt 244  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||    
T  38988292 agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 38988336  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 39880427 - 39880495
Alignment:
Q  212 gtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 280  Q
    ||||||| ||| ||||||| ||| |||| |||||| |||||| |||||| |||||| ||||||||||||    
T  39880427 gtgtgttgatcttgcttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt 39880495  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 40418993 - 40419029
Alignment:
Q  304 taagcagctaatatgcattggtttgatcttctctgct 340  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40418993 taagcagctaatatgcattggttcgatcttctctgct 40419029  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 39880185 - 39880232
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgtttt 67  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  39880185 gatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt 39880232  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 3300086 - 3300147
Alignment:
Q  223 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 280  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3300086 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3300147  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 3392979 - 3393040
Alignment:
Q  223 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 280  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3392979 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3393040  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 39726803 - 39726863
Alignment:
Q  30 ttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 90  Q
    |||| |||||||||||| ||||| | |||||||||||||||  ||||||||| || |||||    
T  39726803 ttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataataacaacaa 39726863  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 25911775 - 25911695
Alignment:
Q  200 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 280  Q
    ||||||||||| ||||||| ||| ||||||| |||||||| ||||||||||||| |||||| ||| |||||||||| ||||    
T  25911775 agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcactattt 25911695  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 44444505 - 44444435
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 90  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||||||   ||||||||| |||||||    
T  44444505 gatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataacgaaaacaa 44444435  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 25912012 - 25911942
Alignment:
Q  20 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 90  Q
    ||||||||| |||| |||||||||||| ||||||| |||||||||||||||  ||||||||| || |||||    
T  25912012 gatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataataacaacaa 25911942  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 25911629 - 25911593
Alignment:
Q  304 taagcagctaatatgcattggtttgatcttctctgct 340  Q
    |||||||||||||| ||||||||||||||||||||||    
T  25911629 taagcagctaatatacattggtttgatcttctctgct 25911593  T

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