View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_14 (Length: 334)
Name: NF12214_high_14
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 45922777 - 45923099
Alignment:
| Q |
4 |
tggcttccggtttttaggctgtctagccaacttatgcttgttttgctgggctg-----ttgttcttgtttctgccatccttctcgccttgagaggattgg |
98 |
Q |
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| T |
45922777 |
tggcttccggtttttaggctgtctagccaacttatgcttgttttgctgggctgctatgttgttcttgtttctgccatccttctcgccttgagaggattgg |
45922876 |
T |
|
| Q |
99 |
cttcttttaataaattgacttctttatcttcgaagttatggaagtaacaaatgctagtagcatgatcaaacttagacaaattccagcatgataat-aaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
45922877 |
cttcttttaataaattgacttctttatcttcgaagttatggaagtaacaaatgctagtagcatgatcaaacttagacaaattccagcacgataataaaaa |
45922976 |
T |
|
| Q |
198 |
aatggatttaacaacttcagctatagaaaagggatttcagcttttatggtggagagagaagagaaatgtagtggaagataaagcnnnnnnntaatcaagt |
297 |
Q |
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| T |
45922977 |
aatggatttaacaacttcagctatagaaaagggatttaagcttttatggtggagagagaagagaaatgtagtggaagataaagcaaaaaaataatcaagt |
45923076 |
T |
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| Q |
298 |
gttgatagaccatgataagattg |
320 |
Q |
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||||||||||||||||||||||| |
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| T |
45923077 |
gttgatagaccatgataagattg |
45923099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 45922344 - 45922313
Alignment:
| Q |
289 |
taatcaagtgttgatagaccatgataagattg |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
45922344 |
taatcaagtgttgatagaccatgataagattg |
45922313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 32547659 - 32547753
Alignment:
| Q |
130 |
gaagttatggaagtaacaaatgctagtagcatgatcaaacttagacaaattccagcatgataataaaaaatggatttaacaacttcagctataga |
224 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||| |||||||| | |||||||||||| |
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| T |
32547659 |
gaagttatggaagtaacaaatgctagcagcatgaccaaacttagacaaattcgagcaagataataaaaaagggatttaatactttcagctataga |
32547753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 9552565 - 9552659
Alignment:
| Q |
130 |
gaagttatggaagtaacaaatgctagtagcatgatcaaacttagacaaattccagcatgataataaaaaatggatttaacaacttcagctataga |
224 |
Q |
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|||| ||| ||||||||||||| ||| ||||||| ||||||||||||||||| | || ||| ||||||| ||||| |||| ||||| ||||||| |
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| T |
9552565 |
gaaggtatagaagtaacaaatggtagcagcatgaccaaacttagacaaattcgaccaatatattaaaaaagggattaaacaccttcaactataga |
9552659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 35943187 - 35943156
Alignment:
| Q |
289 |
taatcaagtgttgatagaccatgataagattg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
35943187 |
taatcaagtgttgatagaccatgataagattg |
35943156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 20904325 - 20904375
Alignment:
| Q |
61 |
tcttgtttctgccatccttctcgccttgagaggattggcttcttttaataa |
111 |
Q |
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||||||||||||||||||||| ||| ||||||||||| | |||||||||| |
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| T |
20904325 |
tcttgtttctgccatccttcttgccgtgagaggattgtttccttttaataa |
20904375 |
T |
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