View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_16 (Length: 314)
Name: NF12214_high_16
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 1334588 - 1334456
Alignment:
| Q |
16 |
ctgtgaatggtaataaggttactcatggtagtgatttgtacagaattcttgaccaatgtaaagttggtgataaggtatggtgctttaatgctcttgtgtc |
115 |
Q |
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| T |
1334588 |
ctgtgaatggtaataaggttactcatggtagtgatttgtacagaattcttgaccaatgtaaagttggtgataaggtatggtgctttaatgctcttgtgtc |
1334489 |
T |
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| Q |
116 |
aatatataagcagagtcggtccaaacatgccct |
148 |
Q |
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| T |
1334488 |
aatatataagcagagtcagtccaaacatgccct |
1334456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 1334423 - 1334319
Alignment:
| Q |
181 |
caagccctttgagacttaaattaaaattcaagttcaattgtattaatttcaaacaatctaggtagcattgacatttaagtttgagtgaatgtttggtagc |
280 |
Q |
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| T |
1334423 |
caagccctttgagacttaaattaaaattcaagttcaattgtattaatatcaaacaatctaggtagcattgacatttaagtttgagtgaatgtttggtagc |
1334324 |
T |
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| Q |
281 |
agata |
285 |
Q |
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||||| |
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| T |
1334323 |
agata |
1334319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 1344526 - 1344443
Alignment:
| Q |
16 |
ctgtgaatggtaataaggttactcatggtagtgatttgtacagaattcttgaccaatgtaaagttggtgataaggtatggtgct |
99 |
Q |
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| T |
1344526 |
ctgtgaatggtaataaggttgctaatggaagtgatttgtacagaattcttgaccaatgtaaagttggtgataaggtatggtgct |
1344443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 1342501 - 1342440
Alignment:
| Q |
217 |
attgtattaatttcaaacaatctaggtagcattgacatttaagtttgagtgaatgtttggta |
278 |
Q |
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| T |
1342501 |
attgtattaatttcacacaatctagccagcattgacattttagattgaatgaatgttaggta |
1342440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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