View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_17 (Length: 295)
Name: NF12214_high_17
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37889783 - 37889597
Alignment:
| Q |
1 |
ttattgaactgtgcgattgaatcagatgacttggtcagaaaaataacatctaggaagctctgctataacccaatttgaaaagctctactgaatcaaaaac |
100 |
Q |
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| T |
37889783 |
ttattgaactgtgcgattgaatcagatgacttggtctgaaaaataacatctaggaagctctgctataacccaatttgaaaagctctactgaatcaaaaac |
37889684 |
T |
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| Q |
101 |
cagacaacataacctaatttcacaaacaaaataataaaaatgcacaagctcttttgtttattttcatctatctaaagctatcaggta |
187 |
Q |
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| T |
37889683 |
cagacaacataacctaatttcacaaacaaaataataaaaattcacaagctcttttgtttattttcatctatctaaagctatcaggta |
37889597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 37184905 - 37184804
Alignment:
| Q |
39 |
aaaaataacatctaggaagctctgctataacccaatttgaaaagctctactgaatcaaaaaccagacaacataacctaatttcacaaacaaaataataaa |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||| |
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| T |
37184905 |
aaaaataacatctaggaagctctgctataacccaatttcaaaagctctactgaaacaaacaccgggcaacataacctaatttcacaaacaaaataataaa |
37184806 |
T |
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| Q |
139 |
aa |
140 |
Q |
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|| |
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| T |
37184805 |
aa |
37184804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 37184658 - 37184624
Alignment:
| Q |
146 |
aagctcttttgtttattttcatctatctaaagcta |
180 |
Q |
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| T |
37184658 |
aagctgttttgtttattttcatctatctaaagcta |
37184624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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