View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_18 (Length: 291)
Name: NF12214_high_18
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 38573344 - 38573605
Alignment:
| Q |
16 |
attactgcaccctaatccatttccatgaattagcctatgatgtattgaactgaataatgttgttctttgcaggcctatttcatacaaattgatggcacgt |
115 |
Q |
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| T |
38573344 |
attactgcaccctaatccatttccatgaattagcctatgatgtattgaactgaataatgttgttctttgcaggcctatttcatacaaattgatggcacgt |
38573443 |
T |
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| Q |
116 |
taaataaattgaccacggtactaacggtgaactaaactacattttacatgtaatctttctttcttacttattataatttgatttctgttttacactttag |
215 |
Q |
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| T |
38573444 |
taaataaattgaccacggtactaacggtgaactaaactacattttacatgtaatctttctttcttacttattataatttgatttctgttttacactttag |
38573543 |
T |
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| Q |
216 |
gtgcgagagtatattgatgacaccgaagattacatcaacatacaggtaagtttcagggcaca |
277 |
Q |
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| T |
38573544 |
gtgcgagagtatattgatgacaccgaagattacatcaacatacaggtaagtttcagggcaca |
38573605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 33808112 - 33808058
Alignment:
| Q |
81 |
tttgcaggcctatttcatacaaattgatggcacgttaaataaattgaccacggta |
135 |
Q |
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| T |
33808112 |
tttgcaggcttatttcatgcaaattgatggcacattaaacaaattaaccacggta |
33808058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 33867581 - 33867527
Alignment:
| Q |
81 |
tttgcaggcctatttcatacaaattgatggcacgttaaataaattgaccacggta |
135 |
Q |
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| T |
33867581 |
tttgcaggcttatttcatgcaaattgatggcacattaaacaaattaaccacggta |
33867527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 33806910 - 33806861
Alignment:
| Q |
217 |
tgcgagagtatattgatgacaccgaagattacatcaacatacaggtaagt |
266 |
Q |
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| T |
33806910 |
tgcgagagtatatcgatgataccgaagattacattaacattcaagtaagt |
33806861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 33866380 - 33866331
Alignment:
| Q |
217 |
tgcgagagtatattgatgacaccgaagattacatcaacatacaggtaagt |
266 |
Q |
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| T |
33866380 |
tgcgagagtatatcgatgataccgaagattacattaacattcaagtaagt |
33866331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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