View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_high_2 (Length: 728)

Name: NF12214_high_2
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12214_high_2
NF12214_high_2
[»] chr8 (1 HSPs)
chr8 (1-715)||(13046905-13047619)
[»] chr5 (5 HSPs)
chr5 (591-712)||(41422965-41423086)
chr5 (1-56)||(20013900-20013955)
chr5 (1-54)||(41422225-41422278)
chr5 (1-54)||(14672316-14672369)
chr5 (1-54)||(41423392-41423445)
[»] chr4 (7 HSPs)
chr4 (591-715)||(30100922-30101046)
chr4 (1-106)||(30101326-30101431)
chr4 (103-359)||(29404818-29405066)
chr4 (2-56)||(52038920-52038974)
chr4 (1-54)||(13417600-13417653)
chr4 (1-54)||(48367387-48367440)
chr4 (1-54)||(56331690-56331743)
[»] chr3 (4 HSPs)
chr3 (591-715)||(30575226-30575350)
chr3 (19-106)||(6529285-6529372)
chr3 (1-106)||(30574844-30574945)
chr3 (1-54)||(30576026-30576079)
[»] chr7 (4 HSPs)
chr7 (591-715)||(15742850-15742974)
chr7 (1-106)||(15743255-15743360)
chr7 (1-54)||(15742096-15742149)
chr7 (1-54)||(23118309-23118362)
[»] chr6 (7 HSPs)
chr6 (591-715)||(1573402-1573526)
chr6 (1-106)||(1573016-1573121)
chr6 (224-354)||(6429262-6429389)
chr6 (224-354)||(12839864-12839994)
chr6 (1-54)||(11381399-11381452)
chr6 (1-54)||(1574227-1574280)
chr6 (1-54)||(29657203-29657256)
[»] chr1 (8 HSPs)
chr1 (591-715)||(28876109-28876233)
chr1 (591-715)||(51837082-51837206)
chr1 (1-106)||(28876514-28876619)
chr1 (1-92)||(51837532-51837623)
chr1 (64-106)||(51837487-51837529)
chr1 (1-54)||(37810817-37810870)
chr1 (1-54)||(28875335-28875388)
chr1 (1-54)||(44031808-44031861)
[»] chr2 (3 HSPs)
chr2 (3-54)||(44113183-44113234)
chr2 (1-54)||(4518762-4518815)
chr2 (1-54)||(44112623-44112676)


Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Complemental strand, 13047619 - 13046905
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047619 aaaataactaactgcatcagcaattaccctatcaataccacccgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 13047520  T
Q  101 gaaactgattcttcggtactagtttattcttccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047519 gaaactgattcttcggtactagtttattcttccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagttt 13047420  T
Q  201 ctataataaccgaaaaggcactaatcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagt 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  13047419 ctataataaccgaaaaggcactaatcaggacaacgccaaacctccatagaatttgatgccgaaattgatgaagtgcttttgattgagaagttccagtagt 13047320  T
Q  301 tgccattgtcgatgcacaaaaaatctggaaaacattttagagtccaacttgtcgtgcatgtcttttgtatggtggaagattttttgtgatgaatctgact 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13047319 tgccattgtcaatgcacaaaaaatctggaaaacattttagagtccaacttgtcatgcatgtcttttgtatggtggaagattttttgtgatgaatctgact 13047220  T
Q  401 tttttggcatcgtgtnnnnnnntttgttgttccggcagcagttgaggttcgatcctgcaaacttgatcttcttttctcgctgccttgtgactggttctgc 500  Q
    ||||||||||| |||        ||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||| |    
T  13047219 tttttggcatcatgtaaaaaaaattgttgttccggcggcagttgaggttcgatcctgccaacttggtctgcttttctcactgccttgtgactggttcttc 13047120  T
Q  501 tcnnnnnnnccaacacttatcgcttcattaactacacttccccgacccccactcttttcttcgcaatttttcttcgttacctctttgttcttctccattt 600  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  13047119 tctttttttccaacacttatcgcttcattaactacacttccccgacccccactcttttcttcgtgatttttcttcgttacctctttgttcttctccattt 13047020  T
Q  601 ctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcattgtgtttttc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13047019 ctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgttgatggtcttctttaagaccggttcattgtgtttttc 13046920  T
Q  701 tgtcatcttccacag 715  Q
    |||||||||||||||    
T  13046919 tgtcatcttccacag 13046905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 591 - 712
Target Start/End: Complemental strand, 41423086 - 41422965
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  41423086 ttctccatttctgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 41422987  T
Q  691 tgtgtttttctgtcatcttcca 712  Q
     |||||||||||||||||||||    
T  41422986 cgtgtttttctgtcatcttcca 41422965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20013900 - 20013955
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacatt 56  Q
    ||||||||| |  ||||||||||||||||||||||||||||| || ||||||||||    
T  20013900 aaaataactgattgcatcagcaattaccctatcaataccacccgatacctaacatt 20013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41422278 - 41422225
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  41422278 aaaataacttactgcatcagcagttaccctatcaataccaccagatacctaaca 41422225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14672369 - 14672316
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  14672369 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 14672316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41423392 - 41423445
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  41423392 aaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 41423445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 591 - 715
Target Start/End: Complemental strand, 30101046 - 30100922
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  30101046 ttctccatttctgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 30100947  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||| ||||||||||||    
T  30100946 cgtgtttttctgccatcttccacag 30100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30101431 - 30101326
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  30101431 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctgagttaaa 30101332  T
Q  101 gaaact 106  Q
    ||||||    
T  30101331 gaaact 30101326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 103 - 359
Target Start/End: Original strand, 29404818 - 29405066
Alignment:
Q  103 aactgattcttcggtactagtttattcttccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagtttct 202  Q
    ||||||||||| |||||||||||||||||||||||  ||||||  |  ||||| || ||   ||||||| |||  ||||||||  |||||||||||| ||    
T  29404818 aactgattcttgggtactagtttattcttccaagctttgacatagaccagtggtctgtt---tcttttctagat-tgtaatcaacaaatcaatagttgct 29404913  T
Q  203 ataataaccgaaaaggcacta--atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagt 300  Q
    ||||||||| |    || |||  ||||| |||| |||||| ||||| |||||| | | || ||||| ||||||| || ||||||| |||   | ||||||    
T  29404914 ataataaccaa----gctctattatcaggacaatgccaaagctccacagaatt-gttaccgaaattaatgaagttctattgattgggaaagcc-agtagt 29405007  T
Q  301 tgccattgtcgatgcacaaaaaatctggaaaacattttagagtccaacttgtcgtgcat 359  Q
    ||||||| || | |||| | ||||||| ||||||||| ||||||||||||| |||||||    
T  29405008 tgccattatcaaagcacgagaaatctgaaaaacatttgagagtccaacttgccgtgcat 29405066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 52038920 - 52038974
Alignment:
Q  2 aaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacatt 56  Q
    |||||||| || ||||||||| ||||||||||||||||||| || ||||||||||    
T  52038920 aaataactgactgcatcagcagttaccctatcaataccaccggatacctaacatt 52038974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13417653 - 13417600
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| ||  |||||||| ||||||||||||||||||| || ||||||||    
T  13417653 aaaataacttactacatcagcagttaccctatcaataccacccgatacctaaca 13417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48367440 - 48367387
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  48367440 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 48367387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 56331743 - 56331690
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||  || ||||||||| ||||||||||||||||||| || ||||||||    
T  56331743 aaaataaccgactgcatcagcagttaccctatcaataccaccagatacctaaca 56331690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 591 - 715
Target Start/End: Original strand, 30575226 - 30575350
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||| ||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  30575226 ttctccatttttgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 30575325  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||||||||||||||||    
T  30575326 cgtgtttttctgtcatcttccacag 30575350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 6529285 - 6529372
Alignment:
Q  19 agcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaagaaact 106  Q
    |||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  6529285 agcagttaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctgagttaaagaaact 6529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30574844 - 30574945
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    ||||||||| || || |||||| ||||||||||||||||||| || ||| |||||| |||    |||||||||||| |||||||||||||||||| ||||    
T  30574844 aaaataactgactgcgtcagcagttaccctatcaataccaccagataccaaacatttccg----ctagaaaaacagccttgtcctcaaggctgagttaaa 30574939  T
Q  101 gaaact 106  Q
    ||||||    
T  30574940 gaaact 30574945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30576026 - 30576079
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  30576026 aaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 30576079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 591 - 715
Target Start/End: Complemental strand, 15742974 - 15742850
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  15742974 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 15742875  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||| ||||||||||||    
T  15742874 cgtgtttttctgccatcttccacag 15742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 15743360 - 15743255
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  15743360 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctgagttaaa 15743261  T
Q  101 gaaact 106  Q
    ||||||    
T  15743260 gaaact 15743255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15742149 - 15742096
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  15742149 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 15742096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23118362 - 23118309
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    |||||||||||| | ||||||| ||||||||| ||||||||| || ||||||||    
T  23118362 aaaataactaactggatcagcagttaccctatgaataccacccgatacctaaca 23118309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 591 - 715
Target Start/End: Original strand, 1573402 - 1573526
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  1573402 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 1573501  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||| ||||||||||||    
T  1573502 cgtgtttttctgccatcttccacag 1573526  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1573016 - 1573121
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    ||||||||| || ||||||||| | |||||||||||| |||| || |||||||||||||| | ||||||||||||| |||||||||||||||||| ||||    
T  1573016 aaaataactgactgcatcagcagtcaccctatcaatatcaccggatacctaacattaccggccgctagaaaaacagccttgtcctcaaggctgagttaaa 1573115  T
Q  101 gaaact 106  Q
    ||||||    
T  1573116 gaaact 1573121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 224 - 354
Target Start/End: Original strand, 6429262 - 6429389
Alignment:
Q  224 atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagttgccattgtcgatgcacaaaaaa 323  Q
    ||||| |||| ||||||  |||| | |||||| |||| |||||||||||||  | ||||||| ||| ||| ||||||| ||||| |  | ||||||||||    
T  6429262 atcaggacaatgccaaaggtccacaaaatttgttgccgaaattgatgaagttatattgattgggaaattccagtagtt-ccattattaaagcacaaaaaa 6429360  T
Q  324 tctggaaaacattttagagtccaacttgtcg 354  Q
    |||| |||||||||  |||||||||||||||    
T  6429361 tctgaaaaacattt--gagtccaacttgtcg 6429389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 224 - 354
Target Start/End: Original strand, 12839864 - 12839994
Alignment:
Q  224 atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagttgccattgtcgatgcacaaaaaa 323  Q
    ||||| |||| |||||| ||||| | |||||| |||| ||||| |||||||  | ||||||| ||| ||| ||||||| ||||| || | ||| ||||||    
T  12839864 atcaggacaatgccaaagctccacaaaatttgttgccgaaatttatgaagttatattgattgggaaattccagtagtt-ccattatcaaagcataaaaaa 12839962  T
Q  324 -tctggaaaacattttagagtccaacttgtcg 354  Q
     |||| ||||||||| ||||||||||||||||    
T  12839963 atctgaaaaacatttgagagtccaacttgtcg 12839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11381452 - 11381399
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  11381452 aaaataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 11381399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1574227 - 1574280
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  1574227 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 1574280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29657256 - 29657203
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || |||| |||| ||||||||||||||||||| || ||||||||    
T  29657256 aaaataactgactgcattagcagttaccctatcaataccaccggatacctaaca 29657203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 591 - 715
Target Start/End: Complemental strand, 28876233 - 28876109
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  28876233 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 28876134  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||| ||||||||||||    
T  28876133 cgtgtttttctgccatcttccacag 28876109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 591 - 715
Target Start/End: Complemental strand, 51837206 - 51837082
Alignment:
Q  591 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 690  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  51837206 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 51837107  T
Q  691 tgtgtttttctgtcatcttccacag 715  Q
     ||||||||||| ||||||||||||    
T  51837106 cgtgtttttctgccatcttccacag 51837082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28876619 - 28876514
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaa 100  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  28876619 aaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctgagttaaa 28876520  T
Q  101 gaaact 106  Q
    ||||||    
T  28876519 gaaact 28876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51837623 - 51837532
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggct 92  Q
    ||||||||| || ||||||||| | ||||||||||| ||||| || ||||||||| ||||||  ||||||||||||  ||||||||||||||    
T  51837623 aaaataactgactgcatcagcagtcaccctatcaatgccaccggatacctaacatcaccgacctctagaaaaacagcgttgtcctcaaggct 51837532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 51837529 - 51837487
Alignment:
Q  64 gctagaaaaacagtcttgtcctcaaggctgagataaagaaact 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  51837529 gctagaaaaacagccttgtcctcaaggctgagttaaagaaact 51837487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37810870 - 37810817
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  37810870 aaaataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 37810817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28875388 - 28875335
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  28875388 aaaataactgactgcatcagcagtcaccctatcaataccaccagatacctaaca 28875335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44031808 - 44031861
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||  || ||||||||| ||||||||||||||||||| || ||||||||    
T  44031808 aaaataaccgactgcatcagcagttaccctatcaataccaccagatacctaaca 44031861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 44113183 - 44113234
Alignment:
Q  3 aataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  44113183 aataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 44113234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4518815 - 4518762
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  4518815 aaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 4518762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44112676 - 44112623
Alignment:
Q  1 aaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 54  Q
    ||||||||| || ||||||||| ||||||||||||| ||||| || ||||||||    
T  44112676 aaaataactgactgcatcagcagttaccctatcaatcccaccggatacctaaca 44112623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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