View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_21 (Length: 256)
Name: NF12214_high_21
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 1684214 - 1684439
Alignment:
| Q |
11 |
cagagattactccaataccattgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcattcatccaattatta |
110 |
Q |
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| T |
1684214 |
cagagattactccaataccattgctgatctgcagtagtcagtgaaagtgta----tattaattaatatgggttaagtataaatcattcatccaattatta |
1684309 |
T |
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| Q |
111 |
actcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgagg |
210 |
Q |
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| T |
1684310 |
actcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgagg |
1684409 |
T |
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| Q |
211 |
aagttaaacacagagagccagaatggcatg |
240 |
Q |
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| T |
1684410 |
aagttaaacacagagagccagaatggcatg |
1684439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 1694736 - 1694874
Alignment:
| Q |
102 |
caattattaactcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagt |
201 |
Q |
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| T |
1694736 |
caattattaactcacaaatcacaacaatactataggaatataaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagt |
1694835 |
T |
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| Q |
202 |
ccattgaggaagttaaacacagagagccagaatggcatg |
240 |
Q |
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| T |
1694836 |
ccattgaggaagttggtaagagagagccagaatggcatg |
1694874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 1694635 - 1694713
Alignment:
| Q |
11 |
cagagattactccaataccattgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatc |
94 |
Q |
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| T |
1694635 |
cagagattactccaataccattactgatctgcaataatcagtaaaaatgtatattaat-----aacatgggttaagtataaatc |
1694713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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