View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_25 (Length: 236)
Name: NF12214_high_25
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 13750945 - 13751155
Alignment:
| Q |
18 |
agaaccacagtgtttctcttcgtattcatctc------aacaacctcatcctcaaccaaacaatataattgaatctaactttaccaattcagatctcata |
111 |
Q |
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| T |
13750945 |
agaaccacagtgtttctcttcatattcatctcttctgcaacaacctcatcctcaaccaaacaatataattgaatctaactttatcaattcagatcccata |
13751044 |
T |
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| Q |
112 |
ttcttcaattataaaattgaaaagtaacttatcttcttccctgaaactattgaatctgaatcatgaacccacttctaataatcaccaaaagaaatttttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
13751045 |
ttcttcaattataaaattgaaaagtaacttatcttcttccctgaaactattgaatctgaatcatgaatccacttctaataatcaccaaaagaaaattttt |
13751144 |
T |
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| Q |
212 |
gctcaaacaca |
222 |
Q |
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||||||||||| |
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| T |
13751145 |
gctcaaacaca |
13751155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 13748352 - 13748443
Alignment:
| Q |
131 |
aaaagtaacttatcttcttccctgaaactattgaatctgaatcatgaacccacttctaataatcaccaaaagaaattttttgctcaaacaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
13748352 |
aaaagtaacttatcttcttccctgaaactattgaatctgaatcatgaatccacttctaataattaccaaaataatttttttgctcaaacaca |
13748443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 13748263 - 13748342
Alignment:
| Q |
21 |
accacagtgtttctcttcgtattcatctc------aacaacctcatcctcaaccaaacaatataattgaatctaacttta |
94 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13748263 |
accacaatgtttctcttcatattcatctcttctgtaacaacctcatcctcaaccaaacaatataattgaatctaacttta |
13748342 |
T |
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