View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_28 (Length: 205)
Name: NF12214_high_28
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 39562384 - 39562211
Alignment:
| Q |
14 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgag |
113 |
Q |
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| T |
39562384 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgag |
39562285 |
T |
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| Q |
114 |
tttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaa |
187 |
Q |
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| T |
39562284 |
tttaattagataagaatgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaa |
39562211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 39572532 - 39572426
Alignment:
| Q |
54 |
gtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
153 |
Q |
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| T |
39572532 |
gtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
39572433 |
T |
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| Q |
154 |
ttcatgg |
160 |
Q |
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|| |||| |
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| T |
39572432 |
ttgatgg |
39572426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 39567060 - 39566887
Alignment:
| Q |
15 |
gcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataatagttaatgtacattatcacaacta-gtga |
112 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||| | | |||||||| || ||| | |||||||||||| ||||||| |||| |
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| T |
39567060 |
gcagagacacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtga |
39566964 |
T |
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| Q |
113 |
gtttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaattt |
190 |
Q |
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||||||| |||||| |||||||||||||| |||||| |||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
39566963 |
gtttaatcagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattt |
39566887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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