View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_high_5 (Length: 587)

Name: NF12214_high_5
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12214_high_5
NF12214_high_5
[»] chr4 (6 HSPs)
chr4 (17-532)||(19668434-19668942)
chr4 (17-364)||(8802775-8803122)
chr4 (366-540)||(8780092-8780262)
chr4 (537-577)||(44092962-44093002)
chr4 (537-576)||(35535330-35535369)
chr4 (79-111)||(25034321-25034353)
[»] chr2 (5 HSPs)
chr2 (17-311)||(19700338-19700632)
chr2 (330-577)||(19700659-19700902)
chr2 (331-388)||(13805333-13805390)
chr2 (331-368)||(27093934-27093971)
chr2 (19-68)||(35672175-35672224)
[»] chr8 (3 HSPs)
chr8 (387-509)||(21426979-21427099)
chr8 (371-488)||(17489892-17490009)
chr8 (537-576)||(27005874-27005913)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 19668434 - 19668942
Alignment:
Q  17 agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19668434 agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 19668533  T
Q  117 aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19668534 aatctctctacaaatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 19668633  T
Q  217 attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagacttcgcn 315  Q
    ||||||||||||||||||         ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||     
T  19668634 attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacaataaaattctttctaaattagatttccaagaaaaaaggacaagacttcgc- 19668731  T
Q  316 nnnnnnnnnnnnnngacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattcc 415  Q
                  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19668732 --gaaaaaaaaaaagacaagattgcttattacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattcc 19668829  T
Q  416 ttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgacatatgatatatatattagctttcatgaatcaacatctg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||    
T  19668830 ttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgtcatatg----atatattagctttcatgaatcaacatctg 19668925  T
Q  516 ccatactagtaaagacc 532  Q
    |||||||||||||||||    
T  19668926 ccatactagtaaagacc 19668942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 8803122 - 8802775
Alignment:
Q  17 agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8803122 agaaagcatgaatatcataatcattaacaagaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 8803023  T
Q  117 aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 216  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8803022 aatctctctacaaatgtcaaattctcatattggattttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 8802923  T
Q  217 attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagacttcgcn 315  Q
    ||||||||||||||||||         |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||     
T  8802922 attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacgataaaattctttctaaattagatttccaagaaaaaaggacaagacttcgca 8802824  T
Q  316 nnnnnnnnnnnnnngacaagattgcttactacttggtagactgatacat 364  Q
                  |||||||||||||||||||||||||||||||||||    
T  8802823 aaaaaaaagaagaagacaagattgcttactacttggtagactgatacat 8802775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 366 - 540
Target Start/End: Complemental strand, 8780262 - 8780092
Alignment:
Q  366 atatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttcta 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8780262 atatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttcta 8780163  T
Q  466 catttatgtgacatatgatatatatattagctttcatgaatcaacatctgccatactagtaaagacctagtaaag 540  Q
    |||||||||||||||||||||||     ||||||||||||||||||||| |||||||||||||||||||||||||    
T  8780162 catttatgtgacatatgatatatc----agctttcatgaatcaacatcttccatactagtaaagacctagtaaag 8780092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 44092962 - 44093002
Alignment:
Q  537 aaagttcttgattatgaagtatccatctcctttccacaggt 577  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  44092962 aaagttcttgattctgaagtattcatctcctttccacaggt 44093002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 576
Target Start/End: Complemental strand, 35535369 - 35535330
Alignment:
Q  537 aaagttcttgattatgaagtatccatctcctttccacagg 576  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  35535369 aaagttcttgattatgaagtatccataacctttccacagg 35535330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 25034353 - 25034321
Alignment:
Q  79 aaaattccaatctctctacaaatgtcaaattct 111  Q
    ||||||| |||||||||||||||||||||||||    
T  25034353 aaaattctaatctctctacaaatgtcaaattct 25034321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 19700338 - 19700632
Alignment:
Q  17 agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19700338 agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc 19700437  T
Q  117 aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19700438 aatctctctacaaatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa 19700537  T
Q  217 attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagactt 311  Q
    ||||||||||||||||||         |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  19700538 attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacgataaaattctttctaaattagatttccaagaaaaaaggacaagactt 19700632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 330 - 577
Target Start/End: Original strand, 19700659 - 19700902
Alignment:
Q  330 gacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19700659 gacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaac 19700758  T
Q  430 gaggagcccccattagatataccacttattcttctacatttatgtgacatatgatatatatattagctttcatgaatcaacatctgccatactagtaaag 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||    
T  19700759 gaggagcccccattagatataccacttattcttctacatttatgtgacatatg----atatattagctttcatgaatcaacatctaccatactagtaaag 19700854  T
Q  530 acctagtaaagttcttgattatgaagtatccatctcctttccacaggt 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19700855 acctagtaaagttcttgattatgaagtatccatctcctttccacaggt 19700902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 13805333 - 13805390
Alignment:
Q  331 acaagattgcttactacttggtagactgatacattatatatagcagagttggatcttt 388  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13805333 acaagattgcttactacttggtagactgatatattatatatagcagagttggatcttt 13805390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 27093934 - 27093971
Alignment:
Q  331 acaagattgcttactacttggtagactgatacattata 368  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  27093934 acaagattgcttactacttggtagaatgatacattata 27093971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 35672175 - 35672224
Alignment:
Q  19 aaagcatgaatatcataatcattaacaacaattatactctccacaatcat 68  Q
    |||| |||||||||||||||||||||||||| ||||| ||||| ||||||    
T  35672175 aaagaatgaatatcataatcattaacaacaactatacgctccataatcat 35672224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 509
Target Start/End: Original strand, 21426979 - 21427099
Alignment:
Q  387 ttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgacatatgatat 486  Q
    ||||||||| ||||||||||||||||||||||  | |||||| || |||| || |||||||| |||||||||||| |||||||  ||| |||||| |||     
T  21426979 ttacaagatagtcatagacttcatattccttacaaattccaatgatgagctcctattagatagaccacttattctcctacattattgt-acatataata- 21427076  T
Q  487 atatattagctttcatgaatcaa 509  Q
    ||||||||| |||||||||||||    
T  21427077 atatattaggtttcatgaatcaa 21427099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 488
Target Start/End: Original strand, 17489892 - 17490009
Alignment:
Q  371 tagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttctacattt 470  Q
    |||| |||||| ||| ||||||||| || |  |||||||| ||||||||||| ||||| ||||||| |||||||  || |||||||||  |||| |||||    
T  17489892 tagccgagttgcatccttacaagatcgttaaggacttcatgttccttattacatccaatgaggagctcccattaagtaaaccacttatctttctgcattt 17489991  T
Q  471 atgtgacatatgatatat 488  Q
    |||| |||||||||||||    
T  17489992 atgtcacatatgatatat 17490009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 576
Target Start/End: Original strand, 27005874 - 27005913
Alignment:
Q  537 aaagttcttgattatgaagtatccatctcctttccacagg 576  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  27005874 aaagttcttgattatgaagtatccataacctttccacagg 27005913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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