View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_high_6 (Length: 487)
Name: NF12214_high_6
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 44392121 - 44391728
Alignment:
| Q |
19 |
tcttacgtattagacaccacttcgatatccctattgaagatgaataaaactggtggctattaagaagtgttaactatacaagcttgagatc----ctcgc |
114 |
Q |
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| T |
44392121 |
tcttacgtattagacaccacttcgatatccctattgaa-atgaataaaactagtggctattaagaagtgttaattatacaagctttctctctctcctcac |
44392023 |
T |
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| Q |
115 |
ttttttgaattgttgaatcgtagaaagatggtgcttattaattattga----------------atcaatgatgcgtaatggttgtatcgatttaaaaac |
198 |
Q |
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| T |
44392022 |
ttttttgaattgttgcatcttagaaagatggtgcttattaatttttgacgttaaaaaattatgaatcaatgatgtttaatggttgtatccatttaaaaac |
44391923 |
T |
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| Q |
199 |
tcaaatnnnnnnnttactattgtagttgctcttatattatttatatgcaaaaattaaggaccaccatatttaacatcaaaattttgatgtcaaaaaatta |
298 |
Q |
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| T |
44391922 |
tcaaataaaaaaattaatattgtagatgctcttatattatttatatgcaaaaattaaggaccaccatatttaacatcaaaattttgatgtcaaaaaatta |
44391823 |
T |
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| Q |
299 |
tttctttcataattaaaaattccttagtttcacgatctatcttttattcaagtgaaatannnnnnnagaaatgtaaagtcagtctaatcaacaac |
393 |
Q |
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| T |
44391822 |
tttctttcataattaaaaattccttagtttcacgatctatcttttattcaagtgaaatatttttttaaaaatgtaaagtcagtctaatcaacaac |
44391728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 44391686 - 44391649
Alignment:
| Q |
440 |
ggttggtattacatttgaatgtataacaaatcacaggt |
477 |
Q |
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| T |
44391686 |
ggttggtattacatttgaatgtataacaaatcacaggt |
44391649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 46971581 - 46971613
Alignment:
| Q |
260 |
caccatatttaacatcaaaattttgatgtcaaa |
292 |
Q |
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| T |
46971581 |
caccttatttaacatcaaaattttgatgtcaaa |
46971613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 36563886 - 36563846
Alignment:
| Q |
263 |
catatttaacatcaaaattttgatgtcaaaaaattatttct |
303 |
Q |
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| T |
36563886 |
catatttgacatcaaaagtttgatgtcaaaaaatcatttct |
36563846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 29598885 - 29598833
Alignment:
| Q |
249 |
aaattaaggaccaccatatttaacatcaaaattttgatgtcaaaaaattattt |
301 |
Q |
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| T |
29598885 |
aaattaaagaacaccattttttacatcaaaatttagatgtcaaaatattattt |
29598833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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