View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_high_8 (Length: 428)

Name: NF12214_high_8

Description: NF12214

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12214_high_8

[»] chr4 (2 HSPs)

[»] chr8 (2 HSPs)

[»] chr3 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 379; E-Value: 0

Query Start/End: Original strand, 18 - 412

Target Start/End: Original strand, 46683921 - 46684315

Alignment:

Q	18	tagatttagtttatatcatatatttcaacacattttcctatcatgcattaagttataaataaaattacctgttcaaccccgcctttgagaactaccaagt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46683921	tagatttagtttatatcatatatttcaacacattttcctatcatgcattaagctgtaaataaaattacctgttcaaccccgcctttgagaactaccaagt	46684020	T

Q	118	cctgttaaatagatttattataaaccacaaaaaacttcagtctatattataatccacagttttgaaaatccccatttagaattcaaattagtaatttgga	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46684021	cctgttaaatagatttattataaaccacaaaaaacttcagtttatattataatccacagttttgaaaatccccatttagaattcaaattagtaatttgga	46684120	T

Q	218	tatttaccacagcaccagtcactagaatgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctggcttcatctc	317	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46684121	tatttaccacagcaccagtcactagaatgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctggcttcatctc	46684220	T

Q	318	agataccttttatagttgaatcaagcaaaatgcaagtcattaatgcaagttgaaaatgaaaataaatatgtaactaacaataacaagtcagggca	412	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46684221	agataccttttatagttgaatcaagcaaaatacaagtcattaatgcaagttgaaaatgaaaataaatatgtaactaacaataacaagtcagggca	46684315	T

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Target: chr4; HSP #2

Raw Score: 32; E-Value: 0.00000001

Query Start/End: Original strand, 86 - 117

Target Start/End: Original strand, 6665082 - 6665113

Alignment:

Q	86	ctgttcaaccccgcctttgagaactaccaagt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6665082	ctgttcaaccccgcctttgagaactaccaagt	6665113	T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 244 - 307

Target Start/End: Original strand, 18167724 - 18167787

Alignment:

Q	244	atgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctg	307	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18167724	atgtaaagatctgttggagactcattttgtagcataacatctactttaggtggaaaatactctg	18167787	T

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Target: chr8; HSP #2

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 244 - 307

Target Start/End: Original strand, 18631280 - 18631343

Alignment:

Q	244	atgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctg	307	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18631280	atgtaaagatctgttggagactcattttgtagcataacatctactttaggtggaaaatactctg	18631343	T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 32; E-Value: 0.00000001

Query Start/End: Original strand, 86 - 117

Target Start/End: Original strand, 43305282 - 43305313

Alignment:

Q	86	ctgttcaaccccgcctttgagaactaccaagt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43305282	ctgttcaaccccgcctttgagaactaccaagt	43305313	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]