View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_1 (Length: 858)
Name: NF12214_low_1
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Complemental strand, 41705887 - 41705459
Alignment:
| Q |
21 |
ccagcgactccggtgggttcggagaaagttgtatgagcacaaccgaatgtgaattttgtaagttgaagagtagaaagagaaagtgtatcgcgatagagag |
120 |
Q |
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| T |
41705887 |
ccagcgactccggtgggttcggagaaagttgtatgagcacaaccgaatgtgaagtttgtaagttgaagagtagaaagagaaagtgtatcgcgatagagag |
41705788 |
T |
|
| Q |
121 |
aagctattaagcttccatcgccgtaagcgtagtagaatggtggacagtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccat |
220 |
Q |
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| T |
41705787 |
aagctattaagcttccatcgccgtaagcgtagtagaatggtggacagtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccat |
41705688 |
T |
|
| Q |
221 |
tgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagag |
320 |
Q |
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| T |
41705687 |
tgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagag |
41705588 |
T |
|
| Q |
321 |
ggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagtta |
420 |
Q |
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| T |
41705587 |
ggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagtta |
41705488 |
T |
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| Q |
421 |
tgggttgggagtggggtccgaggttgaag |
449 |
Q |
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| T |
41705487 |
tgggttgggagtggggtccgaggttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 509 - 846
Target Start/End: Complemental strand, 41705399 - 41705065
Alignment:
| Q |
509 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
608 |
Q |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
609 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
706 |
Q |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-ttttt |
41705201 |
T |
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| Q |
707 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgatgtgagtgagagaatgagagtgttttgttt |
806 |
Q |
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| T |
41705200 |
ttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgatatgagt--gagaatgagagtgttttgttt |
41705105 |
T |
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| Q |
807 |
gttgtttataaaggggaaaaagaagagtgaggcacaggtt |
846 |
Q |
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| T |
41705104 |
gttgtttataaaggggaaaaagaagagtgaggcacaggtt |
41705065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
347 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
427 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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