View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_11 (Length: 413)
Name: NF12214_low_11
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 30401448 - 30401829
Alignment:
| Q |
19 |
gaaacggagctcgagaacaagttgaagagaatgttcgttttagtcgaactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatc |
118 |
Q |
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| T |
30401448 |
gaaatggaactcgagaacaagttgaagagaatgttcgttttagtcgaactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatc |
30401547 |
T |
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| Q |
119 |
agacattacttttttccctctgcaacaagagagagaactgagagacgatattcagaatactctaaggcaaacattggaggccgattcaagagtgacacca |
218 |
Q |
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| T |
30401548 |
tgacgttacctttttccctctgcaacaagagagagaactcagagacgatattcagaatactctaaggcaaacattagaggcagattcaagagtgtcacca |
30401647 |
T |
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| Q |
219 |
tcagatcatagtgctaatagttcttctacatccagatatcctccatctagtatgtctaactccatgtttagtaataaaaactatggcgttgagacctcac |
318 |
Q |
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| T |
30401648 |
tcggatcatagtgcttatagttgttctacatccagatatcctcaatctagtatgtctaactccatgtttagtaatcaaaactatgacgttgagacctcac |
30401747 |
T |
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| Q |
319 |
aattgcaagaaggtaggtatgaggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggt |
400 |
Q |
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| T |
30401748 |
aattgcgagaaggtaggtatcaggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggt |
30401829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 10785075 - 10785014
Alignment:
| Q |
340 |
aggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggtt |
401 |
Q |
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| T |
10785075 |
aggatctactggaacataggtctaatttcctcgaacggagaagaagaatacgatctcaggtt |
10785014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 10785370 - 10785255
Alignment:
| Q |
48 |
aatgttcgttttagtcgaactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatcagacattacttttttccctctgcaacaag |
147 |
Q |
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||||||||||| || |||||||||||||| ||||| |||||||| ||||| | || |||||| ||| | ||| | | |||| ||||||| ||||| |
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| T |
10785370 |
aatgttcgtttcagccgaactttaagtgtcggaaggcttcgtgatagagttcaccgccgatcaggattggctgacttcaacttttgccctctgacacaag |
10785271 |
T |
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| Q |
148 |
agagagaactgagaga |
163 |
Q |
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| T |
10785270 |
agagagaactgagaga |
10785255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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