View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_13 (Length: 375)
Name: NF12214_low_13
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 10441021 - 10441361
Alignment:
| Q |
15 |
cagagaggagaagaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatc |
114 |
Q |
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| T |
10441021 |
cagaggggagaagaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatc |
10441120 |
T |
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| Q |
115 |
attatttaactgatttgcagtctattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtggggg |
214 |
Q |
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| T |
10441121 |
attatttaactgatttgcagactattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtggggg |
10441220 |
T |
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| Q |
215 |
agttaataaggcttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgagg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10441221 |
agttaataaggcttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgagg |
10441320 |
T |
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| Q |
315 |
ccttnnnnnnntttgttgtcccttgttcgtttatgcaactt |
355 |
Q |
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|||| |||||||||| ||||||||||||||||||| |
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| T |
10441321 |
ccttaaaaaaatttgttgtcctttgttcgtttatgcaactt |
10441361 |
T |
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