View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_14 (Length: 348)
Name: NF12214_low_14
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 26881062 - 26880745
Alignment:
| Q |
19 |
agaactatcccggtttcacctgttttacattcttacgaacatgactgtccattgtctaatttgtcttaaaatttcaaatttacataaaatatataggttt |
118 |
Q |
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| T |
26881062 |
agaactatcccggtttcacctgatttacattcttacgaacatgactgtccattgtctaatttgtcttaaaatttcaaatttacataaaatatataggttt |
26880963 |
T |
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| Q |
119 |
agcttacttagaatgggccaaacaacattcataataatcatttaggtgatttttgannnnnnnnngacaattagggacggatgtacatagagtgcctgca |
218 |
Q |
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| T |
26880962 |
ag----cttagaatgggccaaacaacattcataataatcatttaggtgatttttgattttttttt-acaattagggacggatgtacatagagtgcctgca |
26880868 |
T |
|
| Q |
219 |
caaagttttcataatatatatttttgaatggtttaatatgtgtttttatactataaagaagggtttttcctcacacccttcacataannnnnnnnnctta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
26880867 |
caaagttttcataatatatatttttgaatggtttaatatttgtttttatattataaagaagggtttttcctcacacccttcacataatttatttttctta |
26880768 |
T |
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| Q |
319 |
actcatccaatcacacaggttct |
341 |
Q |
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||||||||||||||||| ||||| |
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| T |
26880767 |
actcatccaatcacacaagttct |
26880745 |
T |
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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 2473201 - 2473289
Alignment:
| Q |
214 |
ctgcacaaagttttcataa-tatatatttttgaatggtttaatatgtgtttttatactataaagaagggtttttcctcacacccttcacat |
303 |
Q |
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||||||||||||||||||| ||||| ||||| |||| | |||| ||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
2473201 |
ctgcacaaagttttcataaatatattttttttaatgatataat--gtgtttttatactatgaagaagggtcttccctcacacccttcacat |
2473289 |
T |
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