View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_16 (Length: 347)
Name: NF12214_low_16
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 118 - 340
Target Start/End: Complemental strand, 19470125 - 19469903
Alignment:
| Q |
118 |
aaacaaaaactacagattaaataaaggaatagtcacaatacaaattaatggattcaagtacttcctcccaccaaatcctatcaggaacctgaagagccaa |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19470125 |
aaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagtacttcctctaaccaaatcctatcaggaacctgaagagccaa |
19470026 |
T |
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| Q |
218 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacgtgaaaacatctaataatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19470025 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacctgaaaacatctaataatat |
19469926 |
T |
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| Q |
318 |
tccctagataagtcacaggttct |
340 |
Q |
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|| |||||||||| |||||||| |
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| T |
19469925 |
tctctagataagttccaggttct |
19469903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 117 - 288
Target Start/End: Original strand, 47864317 - 47864488
Alignment:
| Q |
117 |
gaaacaaaaactacagattaaataaaggaatagtcacaatacaaattaatggattcaagtacttcctcccaccaaatcctatcaggaacctgaagagcca |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
47864317 |
gaaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagcacttcctccaaccaaatcctatcaggaacctgaagagcca |
47864416 |
T |
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| Q |
217 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagtt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
47864417 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
47864488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 47865355 - 47865415
Alignment:
| Q |
280 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagtcacaggttct |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47865355 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttct |
47865415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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