View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_2 (Length: 746)
Name: NF12214_low_2
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 14260678 - 14260093
Alignment:
| Q |
7 |
gcagaacctgtgttgtcagtcacacggaatgtgatgcgaaacctatatctaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
106 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260678 |
gcagatcctgtgttgtcagtcacatggaatgtgatgcgaaacctatatccaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
14260579 |
T |
|
| Q |
107 |
tattataagtaccaaactaatattnnnnnnnn----ctaccttggagtaatcattaaaacatgcttattacacctttcacaatagtaagcaggactgtca |
202 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14260578 |
tattataagtaccaaattaatattaaaaaaaaaaaactaccttggagtaatcattaaaacatgcttattacatctttcacaatagtaagcaggactgtca |
14260479 |
T |
|
| Q |
203 |
agaacaacgtgttcatgacaaacacaagataaaaaccaccaaccaccatcggtgacatattggtcaacagtggccattatgatagacattgattcctgca |
302 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260478 |
ggaacaacttgttcatgacaaatacaagataaaaaccaccaaccatcatcggtgacatattggtcaacagtggccattatgatagacattgattcctgca |
14260379 |
T |
|
| Q |
303 |
aattctcaaattagataaagaaatatacaacataaatttgtaaattcaacaattgattgagaatattacagttggacagattctaagtgcagatagagtg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260378 |
aattctcaaattagataaagaaatatacaacataaatttacaaattcaacaattgattgagaatattacagttggacagattctaagtgcagatagagtg |
14260279 |
T |
|
| Q |
403 |
gttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
14260278 |
gttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactctcatatatacccttgtacggtgaaaatgttttgtccatca |
14260179 |
T |
|
| Q |
503 |
tcctgaatataaaaaataaattgaatagatttttnnnnnnnntaatatctttttatacattgtttataataaaaataaacggtaga |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260178 |
tcctgaatataaaaaataaattgaatagatttttataaaaaataatatctttttatacattgtttataataaaaataaacggtaga |
14260093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 583 - 732
Target Start/End: Complemental strand, 14260024 - 14259875
Alignment:
| Q |
583 |
ggtagaagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
682 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260024 |
ggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
14259925 |
T |
|
| Q |
683 |
aattacttacctttccataacttgatctttccaagaaaaactaccacaca |
732 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14259924 |
aattacttacctttccataacttgatctttccaagaaaaactaccacaca |
14259875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 14265444 - 14265402
Alignment:
| Q |
689 |
ttacctttccataacttgatctttccaagaaaaactaccacac |
731 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
14265444 |
ttacatttccataactcgatctttccaagaaaaaccaccacac |
14265402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 147 - 435
Target Start/End: Original strand, 22135992 - 22136279
Alignment:
| Q |
147 |
gagtaatcattaaaacatgcttattacacctttcacaatagtaagcaggactgtcaagaacaacgtgttcatgacaaacacaagataaaaaccaccaacc |
246 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
22135992 |
gagtaatcattcaaacatgcttattacacctttcacaatagtaggcaggactgtctggaacaacttgttcatgacaaacacaagataaataccaccaacc |
22136091 |
T |
|
| Q |
247 |
accatcggtgacatattggtcaacagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaa |
346 |
Q |
| |
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| |||| |||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||| |||||||| || ||||||||||| |||| |
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| T |
22136092 |
atcatcagtgatatattggtcaacagtgaccattatgatagccatcgattcctgcaaattctcacattaga-aaagaaatgtataacataaatttataaa |
22136190 |
T |
|
| Q |
347 |
ttcaacaattgattgagaatattacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctata |
435 |
Q |
| |
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|| || ||||| ||||||| ||||| | ||||||||||||||||| ||| |||||||||| || ||||||||| | ||| ||||||| |
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|
| T |
22136191 |
ttaaataattggttgagaaaattaccactagacagattctaagtgcaaatatagtggttactactgttgagtacacctattaatctata |
22136279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 435 - 516
Target Start/End: Original strand, 22145724 - 22145805
Alignment:
| Q |
435 |
attatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaa |
516 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
22145724 |
attatgaaaccaagtatcttcacgactttcatatatagccttgtaaagtgaaaatgttttgtccaacatcttgaatataaaa |
22145805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 424 - 524
Target Start/End: Complemental strand, 7558952 - 7558852
Alignment:
| Q |
424 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
523 |
Q |
| |
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|||||||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
7558952 |
cattgatctatattatgaaaccaattatcttcatgactttcatatatagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
7558853 |
T |
|
| Q |
524 |
t |
524 |
Q |
| |
|
| |
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|
| T |
7558852 |
t |
7558852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Original strand, 22146052 - 22146095
Alignment:
| Q |
689 |
ttacctttccataacttgatctttccaagaaaaactaccacaca |
732 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||| |
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|
| T |
22146052 |
ttaccttaccataatttgatctttccaaggaaaactaccacaca |
22146095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 19724034 - 19723964
Alignment:
| Q |
222 |
aaacacaagataaaaaccaccaaccaccatcggtgacatattggtcaacagtggccattatgatagacatt |
292 |
Q |
| |
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||||| |||||||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||| |
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| T |
19724034 |
aaacataagataaataccaccaaccatcatcaatgatatattggtcaacagtggtcattatgatagacatt |
19723964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 424 - 524
Target Start/End: Complemental strand, 19723967 - 19723867
Alignment:
| Q |
424 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
523 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
19723967 |
cattaatctatattatgaaaccaattatcttcacgactttcatatatagtattgtaaagtgaaaatgttttgtccaagatcatgaatataaaacataaat |
19723868 |
T |
|
| Q |
524 |
t |
524 |
Q |
| |
|
| |
|
|
| T |
19723867 |
t |
19723867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 524
Target Start/End: Original strand, 8771764 - 8771864
Alignment:
| Q |
424 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
523 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||| | |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
8771764 |
cattgatctatattatgaaaccaattatcttcatgactttcatataaagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
8771863 |
T |
|
| Q |
524 |
t |
524 |
Q |
| |
|
| |
|
|
| T |
8771864 |
t |
8771864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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