View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_21 (Length: 292)
Name: NF12214_low_21
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 1940310 - 1940045
Alignment:
| Q |
11 |
cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt |
110 |
Q |
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| T |
1940310 |
cacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgttccatcttcatt |
1940211 |
T |
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| Q |
111 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttcca |
210 |
Q |
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| T |
1940210 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatatatcacacttcca |
1940111 |
T |
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| Q |
211 |
tccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaat |
274 |
Q |
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| T |
1940110 |
tccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaat |
1940045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 1954777 - 1954512
Alignment:
| Q |
5 |
gagcagcacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccatt |
104 |
Q |
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| T |
1954777 |
gagcatcacaaaaagcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctactccatt |
1954678 |
T |
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| Q |
105 |
ttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcaca |
204 |
Q |
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| T |
1954677 |
ttcattttgcttaagggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatatatcaca |
1954578 |
T |
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| Q |
205 |
cttccatccctattatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaat |
274 |
Q |
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| T |
1954577 |
cttccatccctattatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaat |
1954512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 1925989 - 1925776
Alignment:
| Q |
5 |
gagcagcacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccatt |
104 |
Q |
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| T |
1925989 |
gagcatcacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaactccatc |
1925890 |
T |
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| Q |
105 |
ttcattatgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatc |
201 |
Q |
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| T |
1925889 |
ttcgttttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttccatatatc |
1925790 |
T |
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| Q |
202 |
acacttccatccct |
215 |
Q |
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| T |
1925789 |
acacttccatccct |
1925776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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