View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_27 (Length: 246)
Name: NF12214_low_27
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 5413939 - 5414151
Alignment:
| Q |
20 |
actactccagcaaacatgcacctgggccaccaggattggtattcagcggttgtgactccttctccacatgttgtgggtgctcatcatcgtcattcgcctc |
119 |
Q |
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| T |
5413939 |
actactccagcaaacatgcacctgggccaccaggattggtattcagcagttgtgactccttctccacatattgtgggtgctcatcatcgtcattcgcctc |
5414038 |
T |
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| Q |
120 |
ttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagta |
219 |
Q |
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| T |
5414039 |
ttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcatactcgtgcacctgagatggttcagatctatcagta |
5414138 |
T |
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| Q |
220 |
ctacggtctctgc |
232 |
Q |
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||||||||||||| |
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| T |
5414139 |
ctacggtctctgc |
5414151 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 40570215 - 40570143
Alignment:
| Q |
152 |
cctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacg |
224 |
Q |
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|||||||| ||||||||||||| | | | |||| ||||||||| |||||||| |||||| ||| |||||||| |
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| T |
40570215 |
cctcaacacggtgttgttggggctcgggttcagtctcgtgcactagagatggtccagatccatcggtactacg |
40570143 |
T |
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