View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_28 (Length: 241)
Name: NF12214_low_28
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 42709190 - 42709399
Alignment:
| Q |
14 |
cctgtggctataaattccctaccagtgcaaattgagaggattacacaataggctatatcgaggaaggtgacgttccaacccaatttccagtgctgaatgt |
113 |
Q |
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| T |
42709190 |
cctgtggctataaattccctaccagcacaaattgagaggattacacaataggctatagcgaggaaggtgacgttccaacccaatttccagtgctgaatgt |
42709289 |
T |
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| Q |
114 |
cccttgctatggcgaaggcaacagctaaagactgaattgagcttaagaaacattggagagtcgtaaagattaactttgaagggtagtcatttattagaaa |
213 |
Q |
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| T |
42709290 |
ccctttctatggcgaaggcaacagctaaagactgaattgagcttaataaacattggagagtcgtaaagattaactttgaagggtggtcctttattacaaa |
42709389 |
T |
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| Q |
214 |
agcctgtagc |
223 |
Q |
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|||||||||| |
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| T |
42709390 |
agcctgtagc |
42709399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 43623449 - 43623277
Alignment:
| Q |
46 |
tgagaggattacacaataggctatatcgaggaaggtgacgttccaacccaatttccagtgctgaatgtcccttgctatggcgaaggcaacagctaaagac |
145 |
Q |
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||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| ||||||| ||||||| ||||||||| |
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| T |
43623449 |
tgagaggtttacacaataggctatagcgaggaggctgacgttccaacccaatttccactgctcaatgtccctttctatggccaaggcaatagctaaagat |
43623350 |
T |
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| Q |
146 |
tgaattgagcttaagaaacattggagagtcgtaaagattaactttgaagggtagtcatttattagaaaagcct |
218 |
Q |
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| T |
43623349 |
tgaattgagcttaagaaacattggagagtcgtaaagctcaactttgaagggtagtcttttaatacaaaagcct |
43623277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 38765786 - 38765750
Alignment:
| Q |
138 |
ctaaagactgaattgagcttaagaaacattggagagt |
174 |
Q |
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| T |
38765786 |
ctaaagactgaattgagcttaagaaacattgaagagt |
38765750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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