View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_low_4 (Length: 661)

Name: NF12214_low_4
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12214_low_4
NF12214_low_4
[»] chr8 (10 HSPs)
chr8 (14-366)||(9334210-9334562)
chr8 (398-646)||(9334563-9334811)
chr8 (334-494)||(9941136-9941290)
chr8 (334-434)||(8207599-8207699)
chr8 (18-67)||(20284824-20284873)
chr8 (18-67)||(21071453-21071502)
chr8 (68-102)||(6161948-6161982)
chr8 (454-495)||(8207707-8207748)
chr8 (67-103)||(21273746-21273782)
chr8 (67-103)||(38844826-38844862)
[»] chr1 (12 HSPs)
chr1 (334-495)||(42362717-42362886)
chr1 (18-59)||(13361494-13361535)
chr1 (67-103)||(40139125-40139161)
chr1 (67-102)||(11947795-11947830)
chr1 (67-102)||(31184281-31184316)
chr1 (67-102)||(43612105-43612140)
chr1 (18-72)||(45190678-45190732)
chr1 (67-104)||(46947979-46948016)
chr1 (72-104)||(31847226-31847258)
chr1 (76-104)||(35030796-35030824)
chr1 (67-103)||(41507219-41507255)
chr1 (67-103)||(48872053-48872089)
[»] chr7 (8 HSPs)
chr7 (67-107)||(30818033-30818073)
chr7 (67-102)||(22692084-22692119)
chr7 (67-102)||(34992360-34992395)
chr7 (67-101)||(43171209-43171243)
chr7 (67-103)||(2347095-2347131)
chr7 (67-103)||(26153645-26153681)
chr7 (67-103)||(33050182-33050218)
chr7 (66-102)||(41590555-41590591)
[»] chr4 (13 HSPs)
chr4 (67-103)||(3475868-3475904)
chr4 (67-102)||(11012141-11012176)
chr4 (67-102)||(24088600-24088635)
chr4 (69-107)||(12074189-12074227)
chr4 (67-105)||(51160673-51160711)
chr4 (67-104)||(23220333-23220370)
chr4 (67-104)||(24772669-24772706)
chr4 (69-102)||(35661635-35661668)
chr4 (67-104)||(39010173-39010210)
chr4 (70-103)||(51324618-51324651)
chr4 (67-103)||(30042133-30042169)
chr4 (67-103)||(32365692-32365728)
chr4 (586-630)||(47153820-47153864)
[»] chr3 (7 HSPs)
chr3 (67-103)||(19418193-19418229)
chr3 (67-102)||(50652388-50652423)
chr3 (67-104)||(50280123-50280160)
chr3 (67-103)||(462437-462473)
chr3 (67-103)||(1402649-1402685)
chr3 (67-103)||(11327107-11327143)
chr3 (67-103)||(30580132-30580168)
[»] chr2 (6 HSPs)
chr2 (67-102)||(3299141-3299176)
chr2 (69-102)||(10749717-10749750)
chr2 (18-51)||(44050032-44050065)
chr2 (76-104)||(8757553-8757581)
chr2 (66-102)||(9834105-9834141)
chr2 (67-103)||(15123972-15124008)
[»] chr6 (2 HSPs)
chr6 (69-103)||(21857605-21857639)
chr6 (67-104)||(12177575-12177612)
[»] chr5 (9 HSPs)
chr5 (68-102)||(8897382-8897416)
chr5 (18-47)||(21012585-21012614)
chr5 (18-67)||(22203824-22203873)
chr5 (67-104)||(31708368-31708405)
chr5 (67-99)||(9065434-9065466)
chr5 (67-103)||(16143389-16143425)
chr5 (70-106)||(30776632-30776668)
chr5 (67-99)||(41179400-41179432)
chr5 (67-103)||(42699056-42699092)
[»] scaffold0020 (1 HSPs)
scaffold0020 (67-104)||(155904-155941)
[»] scaffold0002 (1 HSPs)
scaffold0002 (67-103)||(6426-6462)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 9334210 - 9334562
Alignment:
Q  14 tgtgcaaccattttatgacaatttttgtgacaaccttcattttctcacttcttagttgtcataaaatggttgtacaaataacatttctcaaggagtatca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334210 tgtgcaaccattttatgacaatttttgtgacaaccttcattttctcacttcttagttgtcataaaatggttgtacaaataacatttctcaaggagtatca 9334309  T
Q  114 cctgtgagtgagtaattcaaaatttggagattttacttttagcaaaaattatgtcgtaaatttggctcgagcgaaacatcgcatttaaaacaacaagaaa 213  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9334310 cttgtgagtgagtaattcaaaatttggagattttactttcagcaaaaattatgtggtaaatttggctcgagcgaaacatcgcatttaaaacaacaagaaa 9334409  T
Q  214 gcgtttgaagtcttgaaaattatttttgaatagttttgttcattggcagcaaaaaagagtaagaatgcaccttattttcaatgatactctcaaggaatta 313  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334410 gcttttgaagtcttgaaaattatttttgaatagctttgttcattggcagcaaaaaagagtaagaatgcaccttattttcaatgatactctcaaggaatta 9334509  T
Q  314 gagtaaaacatggagaggatcactgaaaatccatatatctacgttattttacg 366  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9334510 gagtaaaacatggagaggatcactgaaaatccatatatctaccttattttacg 9334562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 398 - 646
Target Start/End: Original strand, 9334563 - 9334811
Alignment:
Q  398 agtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaatcaaaga 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9334563 agtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacactaggaggagaatataataaatcaaaga 9334662  T
Q  498 gagttgttctttaggcactctttaattgtacaaaaaatgcaactattgttggttgagcctatggttcgccacaaaaagattttaaagtgttcgacacatt 597  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9334663 gagttgttctttaggcactctttaattgtaccaaaaatgcaactattgttggttgagcctatggttcgccacaaaaagattttaaagtgttccacacatt 9334762  T
Q  598 ttaaattggtccaatcattttttaaatcgatttgattgatttacatagt 646  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  9334763 ttaaattggtccaatcattttttaaatcggtttgatcgatttaaatagt 9334811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 494
Target Start/End: Original strand, 9941136 - 9941290
Alignment:
Q  334 cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttataagtcctgcttccaaatctttttcctacaggaaaaaa 433  Q
    |||||||||| || |||||||| ||||| | |||||||||||||||| || |||||| |||| || | |||||||| | ||||||| ||||||    |||    
T  9941136 cactgaaaattcagatatctaccttattctgcggcttggctttgctgttcccgtaacatttacaacttctgcttcccactcttttttctacag----aaa 9941231  T
Q  434 gaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaatcaa 494  Q
    ||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  9941232 gaaaga--gagagaattggatacattacaatttacattaggaggagaatataacaaatcaa 9941290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 8207599 - 8207699
Alignment:
Q  334 cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttataagtcctgcttccaaatctttttcctacaggaaaaaa 433  Q
    |||||||||  || |||||||| ||||||| |||||||||||||||| ||  ||||| |||| || | | |||||||| ||||||| |||||| ||||||    
T  8207599 cactgaaaactcagatatctaccttattttgcggcttggctttgctgttccggtaacatttacaacttccgcttccaactcttttttctacagaaaaaaa 8207698  T
Q  434 g 434  Q
    |    
T  8207699 g 8207699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 20284873 - 20284824
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttcattttctcacttctta 67  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  20284873 caaccatttgatgacaacttttgtgacaaccttctttttctctcttctta 20284824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 21071502 - 21071453
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttcattttctcacttctta 67  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  21071502 caaccatttgatgacaacttttgtgacaaccttctttttctctcttctta 21071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 6161982 - 6161948
Alignment:
Q  68 gttgtcataaaatggttgtacaaataacatttctc 102  Q
    |||||||||||||||||||||||||| ||||||||    
T  6161982 gttgtcataaaatggttgtacaaatatcatttctc 6161948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 8207707 - 8207748
Alignment:
Q  454 tactttacaatttacattaggaggagaatataataaatcaaa 495  Q
    |||||||| |||||||||||||||| ||||||||||| ||||    
T  8207707 tactttacgatttacattaggaggaaaatataataaaccaaa 8207748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 21273746 - 21273782
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  21273746 agttgtcacaaaatggttgtacaaatatcatttctca 21273782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 38844826 - 38844862
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  38844826 agttgtcacaaaatggttgtacaaatatcatttctca 38844862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 495
Target Start/End: Original strand, 42362717 - 42362886
Alignment:
Q  334 cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttataagtcctgcttccaaatctttttcctac-aggaaaaa 432  Q
    |||||||||  || |||||||| |||||||||||||||||||||||  || |||||| |||| || | | |||||||| ||||||| |||| |  |||||    
T  42362717 cactgaaaactcagatatctaccttattttacggcttggctttgctattcccgtaacatttacaacttccgcttccaactcttttttctacaaaaaaaaa 42362816  T
Q  433 agaaagaaagaga-------gaattggatactttacaatttacattaggaggagaatataataaatcaaa 495  Q
    | ||| ||| | |       |||||||| | |||||| |||| |||||||||||||||||||||||||||    
T  42362817 ataaataaataaataaaaaggaattggaaaatttacagtttatattaggaggagaatataataaatcaaa 42362886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 13361494 - 13361535
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttcattttctc 59  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  13361494 caacaattttatgacaatttttgtgacaaccttctttttctc 13361535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 40139161 - 40139125
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40139161 agttgtcataaaatggttgtacaaatatcatttctca 40139125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 11947830 - 11947795
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11947830 agttgtcataaaatggttgtacaaatatcatttctc 11947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 31184316 - 31184281
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  31184316 agttgtcataaaatggttgtacaaatatcatttctc 31184281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 43612105 - 43612140
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  43612105 agttgtcataaaatggttgtacaaatatcatttctc 43612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 45190732 - 45190678
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttcattttctcacttcttagttgt 72  Q
    |||| |||| |||||||||||||| ||||||||| ||||||| ||||||| ||||    
T  45190732 caactatttaatgacaatttttgtaacaaccttctttttctctcttcttatttgt 45190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 46948016 - 46947979
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  46948016 agttgtcataaaatggatgtacaaatatcatttctcaa 46947979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 31847226 - 31847258
Alignment:
Q  72 tcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||||||||||||||| ||||||||||    
T  31847226 tcataaaatggttgtacaaatatcatttctcaa 31847258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 35030796 - 35030824
Alignment:
Q  76 aaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||||||||||||||||||||||    
T  35030796 aaaatggttgtacaaataacatttctcaa 35030824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 41507219 - 41507255
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  41507219 agttgtcacaaaatggttgtacaaatatcatttctca 41507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 48872053 - 48872089
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  48872053 agttgtcaaaaaatggttgtacaaatatcatttctca 48872089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 30818033 - 30818073
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaagga 107  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  30818033 agttgtcataaaatggttgtacaaatatcatttcttaagga 30818073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 22692119 - 22692084
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  22692119 agttgtcataaaatggttgtacaaatatcatttctc 22692084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 34992360 - 34992395
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34992360 agttgtcataaaatggttgtacaaatatcatttctc 34992395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 43171209 - 43171243
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttct 101  Q
    ||||||||||||||||||||||||||| |||||||    
T  43171209 agttgtcataaaatggttgtacaaatatcatttct 43171243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 2347095 - 2347131
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  2347095 agttgtcacaaaatggttgtacaaatatcatttctca 2347131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 26153681 - 26153645
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||||||||| |||||||||||| |||||||||    
T  26153681 agttgtcataaaatagttgtacaaatatcatttctca 26153645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 33050218 - 33050182
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  33050218 agttgtcacaaaatggttgtacaaatatcatttctca 33050182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 41590555 - 41590591
Alignment:
Q  66 tagttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  41590555 tagttgttataaaatggttgtacaaatatcatttctc 41590591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 3475904 - 3475868
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3475904 agttgtcataaaatggttgtacaaatatcatttctca 3475868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 11012176 - 11012141
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11012176 agttgtcataaaatggttgtacaaatatcatttctc 11012141  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 24088600 - 24088635
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  24088600 agttgtcataaaatggttgtacaaatatcatttctc 24088635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 12074189 - 12074227
Alignment:
Q  69 ttgtcataaaatggttgtacaaataacatttctcaagga 107  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  12074189 ttgtcataaaatggttgtacaaatatcatttctctagga 12074227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 51160673 - 51160711
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaag 105  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  51160673 agttgtcataaaatgtttgtacaaatatcatttctcaag 51160711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 23220370 - 23220333
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  23220370 agttgtcaaaaaatggttgtacaaatatcatttctcaa 23220333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 24772706 - 24772669
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  24772706 agttgtcataaaatggatgtacaaatatcatttctcaa 24772669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 35661635 - 35661668
Alignment:
Q  69 ttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||| ||||||||    
T  35661635 ttgtcataaaatggttgtacaaatatcatttctc 35661668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 39010173 - 39010210
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  39010173 agttgtcacaaaatggttgtacaaatatcatttctcaa 39010210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 51324618 - 51324651
Alignment:
Q  70 tgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||| ||||||||||||||||||||||||||||    
T  51324618 tgtcacaaaatggttgtacaaataacatttctca 51324651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 30042169 - 30042133
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  30042169 agttgtcacaaaatggttgtacaaatatcatttctca 30042133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 32365692 - 32365728
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  32365692 agttgtcacaaaatggttgtacaaatatcatttctca 32365728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 630
Target Start/End: Complemental strand, 47153864 - 47153820
Alignment:
Q  586 gttcgacacattttaaattggtccaatcattttttaaatcgattt 630  Q
    ||||||||||||| |||| ||| |||||| |||||||||||||||    
T  47153864 gttcgacacatttcaaatcggttcaatcactttttaaatcgattt 47153820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 19418193 - 19418229
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||||||||||||||||||||||||| |||||||||    
T  19418193 agttgtcataaaatggttgtacaaatatcatttctca 19418229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 50652423 - 50652388
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50652423 agttgtcataaaatggttgtacaaatatcatttctc 50652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 50280123 - 50280160
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  50280123 agttgtcatagaatggttgtacaaatatcatttctcaa 50280160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 462437 - 462473
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  462437 agttgtcacaaaatggttgtacaaatatcatttctca 462473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 1402685 - 1402649
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||||||||||| |||||||||| |||||||||    
T  1402685 agttgtcataaaatggatgtacaaatatcatttctca 1402649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 11327143 - 11327107
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  11327143 agttgtcacaaaatggttgtacaaatatcatttctca 11327107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 30580168 - 30580132
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  30580168 agttgtcataaaatggttgtataaatatcatttctca 30580132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 3299141 - 3299176
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3299141 agttgtcataaaatggttgtacaaatatcatttctc 3299176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 10749717 - 10749750
Alignment:
Q  69 ttgtcataaaatggttgtacaaataacatttctc 102  Q
    ||||||||||||||||||||||||| ||||||||    
T  10749717 ttgtcataaaatggttgtacaaatatcatttctc 10749750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 44050032 - 44050065
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttc 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  44050032 caaccattttatgacaacttttgtgacaaccttc 44050065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 8757581 - 8757553
Alignment:
Q  76 aaaatggttgtacaaataacatttctcaa 104  Q
    |||||||||||||||||||||||||||||    
T  8757581 aaaatggttgtacaaataacatttctcaa 8757553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 9834105 - 9834141
Alignment:
Q  66 tagttgtcataaaatggttgtacaaataacatttctc 102  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  9834105 tagttgtcataaaatggttgtataaatatcatttctc 9834141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 15123972 - 15124008
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  15123972 agttgtcaaaaaatggttgtacaaatatcatttctca 15124008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 21857605 - 21857639
Alignment:
Q  69 ttgtcataaaatggttgtacaaataacatttctca 103  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857605 ttgtcataaaatggttgtacaaatatcatttctca 21857639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 12177612 - 12177575
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  12177612 agttgtcacaaaatagttgtacaaataacatttctcaa 12177575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 8897416 - 8897382
Alignment:
Q  68 gttgtcataaaatggttgtacaaataacatttctc 102  Q
    |||||||||||||||||||||||||| ||||||||    
T  8897416 gttgtcataaaatggttgtacaaatatcatttctc 8897382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 21012585 - 21012614
Alignment:
Q  18 caaccattttatgacaatttttgtgacaac 47  Q
    ||||||||||||||||||||||||||||||    
T  21012585 caaccattttatgacaatttttgtgacaac 21012614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 22203873 - 22203824
Alignment:
Q  18 caaccattttatgacaatttttgtgacaaccttcattttctcacttctta 67  Q
    ||||||||| |||  ||||||||||||||||||| ||||||| |||||||    
T  22203873 caaccatttgatggtaatttttgtgacaaccttccttttctctcttctta 22203824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 31708405 - 31708368
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  31708405 agttgttataaaatggttgtacaaatatcatttctcaa 31708368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 9065466 - 9065434
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacattt 99  Q
    ||||||||||||||||||||||||||| |||||    
T  9065466 agttgtcataaaatggttgtacaaatatcattt 9065434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 16143425 - 16143389
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  16143425 agttgtcacaaaatggttgtacaaatatcatttctca 16143389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 30776668 - 30776632
Alignment:
Q  70 tgtcataaaatggttgtacaaataacatttctcaagg 106  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  30776668 tgtcataaaatggttgtataaatatcatttctcaagg 30776632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 41179432 - 41179400
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacattt 99  Q
    |||| ||||||||||||||||||||||||||||    
T  41179432 agttatcataaaatggttgtacaaataacattt 41179400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 42699092 - 42699056
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||| |||||||||||||||||| |||||||||    
T  42699092 agttgtcacaaaatggttgtacaaatatcatttctca 42699056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 155941 - 155904
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctcaa 104  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  155941 agttgtaataaaatggttgtacaaatatcatttctcaa 155904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 6462 - 6426
Alignment:
Q  67 agttgtcataaaatggttgtacaaataacatttctca 103  Q
    |||||||||||||||| |||||||||| |||||||||    
T  6462 agttgtcataaaatggatgtacaaatatcatttctca 6426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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