View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12214_low_5 (Length: 660)

Name: NF12214_low_5
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12214_low_5
NF12214_low_5
[»] chr4 (1 HSPs)
chr4 (17-650)||(42547784-42548417)


Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 17 - 650
Target Start/End: Original strand, 42547784 - 42548417
Alignment:
Q  17 aattttaatataccctatccaaccaaagcactaaagatgtgttgaagaaaaccattagaaccaaatctaaacatagatatcctaaattgtttcaaaattt 116  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42547784 aattctaatataccctatctaaccaaagcactaaagatgtgttgaagaaaaccattagaaccaaatctaaacatagatatcctaaattgtttcaaaattt 42547883  T
Q  117 atctgtctgtttccccgagacagggaacgagacagaaagtaaagttcataaaatacaaaacataagaagcaaatgtacttgcaacatatcatatccatga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42547884 atctgtctgtttccccgagacagggaacgagacagaaagtaaagttcataaaatacaaaacataagaagcaaatgtacttgcaacatatcatatccatga 42547983  T
Q  217 ctatctagcctatttaacgagatcaaggatgatctcgttaaccaaactagttaaaacctcgttttccaggtcaagaacaagttgttctgtttcttgatca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42547984 ctatctagcctatttaacgagatcaaggatgatctcgttaaccaaactagttaaaacctcgttttccaggtcaagaacaagttgttctgtttcttgatca 42548083  T
Q  317 gtgtttttccactctccacatttttccatctcactaatgtaaacatgtcttccttccttcacttcccaacccaaatacagttcttggggttgcccttgta 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42548084 gtgtttttccactctccacatttttccatctcactaatgtaaacatgtcttccttctttcacttcccaacccaaatacagttcttggggttgcccttgta 42548183  T
Q  417 tccaatcctcaaccaccttgcaaaagttaagcttctttgtacaattaacaataacattattttcctcaatgctttgttcgatgtaatcgaacagtaggtt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42548184 tccaatcctcaaccaccttgcaaaagttaagcttctttgaacaattaacattaacattattttcctcaatgctttgttcgatgtaatcgaacagtaggtt 42548283  T
Q  517 ctccgcgttaatcatcaaatcattggatggaactgaccttttcacaaaattgaaaagatcatgtgcatcttcctcattgttgtttccaataactggtgca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42548284 ctccgcgttaatcatcaaatcattggatggaactgaccttttcacaaaattgaaaagatcatgtgcatcttcctcattgttgtttccaataactggtgca 42548383  T
Q  617 aattctgaacattgttttgtagaatggttctgtg 650  Q
    ||||||||||||||||||||||||||||||||||    
T  42548384 aattctgaacattgttttgtagaatggttctgtg 42548417  T

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