View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12214_low_6 (Length: 587)
Name: NF12214_low_6
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 19668434 - 19668942
Alignment:
| Q |
17 |
agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19668434 |
agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
19668533 |
T |
|
| Q |
117 |
aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19668534 |
aatctctctacaaatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
19668633 |
T |
|
| Q |
217 |
attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagacttcgcn |
315 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19668634 |
attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacaataaaattctttctaaattagatttccaagaaaaaaggacaagacttcgc- |
19668731 |
T |
|
| Q |
316 |
nnnnnnnnnnnnnngacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattcc |
415 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19668732 |
--gaaaaaaaaaaagacaagattgcttattacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattcc |
19668829 |
T |
|
| Q |
416 |
ttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgacatatgatatatatattagctttcatgaatcaacatctg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
19668830 |
ttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgtcatatg----atatattagctttcatgaatcaacatctg |
19668925 |
T |
|
| Q |
516 |
ccatactagtaaagacc |
532 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
19668926 |
ccatactagtaaagacc |
19668942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 8803122 - 8802775
Alignment:
| Q |
17 |
agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8803122 |
agaaagcatgaatatcataatcattaacaagaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
8803023 |
T |
|
| Q |
117 |
aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8803022 |
aatctctctacaaatgtcaaattctcatattggattttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
8802923 |
T |
|
| Q |
217 |
attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagacttcgcn |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8802922 |
attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacgataaaattctttctaaattagatttccaagaaaaaaggacaagacttcgca |
8802824 |
T |
|
| Q |
316 |
nnnnnnnnnnnnnngacaagattgcttactacttggtagactgatacat |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
8802823 |
aaaaaaaagaagaagacaagattgcttactacttggtagactgatacat |
8802775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 366 - 540
Target Start/End: Complemental strand, 8780262 - 8780092
Alignment:
| Q |
366 |
atatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttcta |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8780262 |
atatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttcta |
8780163 |
T |
|
| Q |
466 |
catttatgtgacatatgatatatatattagctttcatgaatcaacatctgccatactagtaaagacctagtaaag |
540 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8780162 |
catttatgtgacatatgatatatc----agctttcatgaatcaacatcttccatactagtaaagacctagtaaag |
8780092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 44092962 - 44093002
Alignment:
| Q |
537 |
aaagttcttgattatgaagtatccatctcctttccacaggt |
577 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
44092962 |
aaagttcttgattctgaagtattcatctcctttccacaggt |
44093002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 576
Target Start/End: Complemental strand, 35535369 - 35535330
Alignment:
| Q |
537 |
aaagttcttgattatgaagtatccatctcctttccacagg |
576 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35535369 |
aaagttcttgattatgaagtatccataacctttccacagg |
35535330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 25034353 - 25034321
Alignment:
| Q |
79 |
aaaattccaatctctctacaaatgtcaaattct |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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|
| T |
25034353 |
aaaattctaatctctctacaaatgtcaaattct |
25034321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 19700338 - 19700632
Alignment:
| Q |
17 |
agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19700338 |
agaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaattccaatctctctacaaatgtcaaattctcatcc |
19700437 |
T |
|
| Q |
117 |
aatctctctacatatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19700438 |
aatctctctacaaatgtcaaattctcatattggcttttgaaaattctcttggcaaatgaaaacaaaacatagcagagttgaagttaatcaaaacacgtaa |
19700537 |
T |
|
| Q |
217 |
attaaatcaaattcagctnnnnnnnnntgctatatcaaattaattgacgat-aaattgtttctaaattagatttccaagaaaaaaggacaagactt |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
19700538 |
attaaatcaaattcagct-aaaaaaaatgctatatcaaattaattgacgataaaattctttctaaattagatttccaagaaaaaaggacaagactt |
19700632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 330 - 577
Target Start/End: Original strand, 19700659 - 19700902
Alignment:
| Q |
330 |
gacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19700659 |
gacaagattgcttactacttggtagactgatacattatatatagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaac |
19700758 |
T |
|
| Q |
430 |
gaggagcccccattagatataccacttattcttctacatttatgtgacatatgatatatatattagctttcatgaatcaacatctgccatactagtaaag |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19700759 |
gaggagcccccattagatataccacttattcttctacatttatgtgacatatg----atatattagctttcatgaatcaacatctaccatactagtaaag |
19700854 |
T |
|
| Q |
530 |
acctagtaaagttcttgattatgaagtatccatctcctttccacaggt |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19700855 |
acctagtaaagttcttgattatgaagtatccatctcctttccacaggt |
19700902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 13805333 - 13805390
Alignment:
| Q |
331 |
acaagattgcttactacttggtagactgatacattatatatagcagagttggatcttt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13805333 |
acaagattgcttactacttggtagactgatatattatatatagcagagttggatcttt |
13805390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 27093934 - 27093971
Alignment:
| Q |
331 |
acaagattgcttactacttggtagactgatacattata |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27093934 |
acaagattgcttactacttggtagaatgatacattata |
27093971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 35672175 - 35672224
Alignment:
| Q |
19 |
aaagcatgaatatcataatcattaacaacaattatactctccacaatcat |
68 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
35672175 |
aaagaatgaatatcataatcattaacaacaactatacgctccataatcat |
35672224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 509
Target Start/End: Original strand, 21426979 - 21427099
Alignment:
| Q |
387 |
ttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttctacatttatgtgacatatgatat |
486 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||| || |||| || |||||||| |||||||||||| ||||||| ||| |||||| ||| |
|
|
| T |
21426979 |
ttacaagatagtcatagacttcatattccttacaaattccaatgatgagctcctattagatagaccacttattctcctacattattgt-acatataata- |
21427076 |
T |
|
| Q |
487 |
atatattagctttcatgaatcaa |
509 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
21427077 |
atatattaggtttcatgaatcaa |
21427099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 488
Target Start/End: Original strand, 17489892 - 17490009
Alignment:
| Q |
371 |
tagcagagttggatctttacaagattgtcatagacttcatattccttattacttccaacgaggagcccccattagatataccacttattcttctacattt |
470 |
Q |
| |
|
|||| |||||| ||| ||||||||| || | |||||||| ||||||||||| ||||| ||||||| ||||||| || ||||||||| |||| ||||| |
|
|
| T |
17489892 |
tagccgagttgcatccttacaagatcgttaaggacttcatgttccttattacatccaatgaggagctcccattaagtaaaccacttatctttctgcattt |
17489991 |
T |
|
| Q |
471 |
atgtgacatatgatatat |
488 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
17489992 |
atgtcacatatgatatat |
17490009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 576
Target Start/End: Original strand, 27005874 - 27005913
Alignment:
| Q |
537 |
aaagttcttgattatgaagtatccatctcctttccacagg |
576 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27005874 |
aaagttcttgattatgaagtatccataacctttccacagg |
27005913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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