View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12214_low_8 (Length: 430)
Name: NF12214_low_8
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 24400451 - 24400854
Alignment:
| Q |
11 |
gaacctgtgccggtcaagcatgcatagcaattgactatgtcattgtggaaaagaggtgctgttcaaaattggtacatctcttaaattcaagtattcaggt |
110 |
Q |
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| T |
24400451 |
gaacttgtgccggtcaagcatgcatagcaattgactatgtcattgtggaaaagagatgctgttcaaaattggtacatctcttaaattcaagtattcaggt |
24400550 |
T |
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| Q |
111 |
tcactgttctgtaagtttttgatattacatttaattcattaaacttactcttgttttattttatttctataaggtggaattgatgaaggtgtggatcaag |
210 |
Q |
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| T |
24400551 |
tcactgttctgtaagtttttgatattacatttaattcattaaacttactcttgttttattttatttctataaggtggaattgatgaaggtgtggatcaag |
24400650 |
T |
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| Q |
211 |
aaaatgtttggagacaacccacaacattccaacactatagcaaggatagttaataaacaacacttaactagattaatgaaacttcttgatgatcaaaagg |
310 |
Q |
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| T |
24400651 |
aaaatgtttggagacaacccacaacattccaacactatagcaaggatagttaataaacaacacttaactagattaatgaaacttcttgatgatcaaaagg |
24400750 |
T |
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| Q |
311 |
ttcaagaatctgtggtttatggtggctcaattgacgaagaaaacttgtaaatatttaacaccctacctttcacaaactaatattcctaaattcctattac |
410 |
Q |
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| T |
24400751 |
ttcaagaatctgtggtttatggtggctcaattgacgaagaaaacttgtaaatatttaacaccctacctttcacaaactaatattcctaaattcctattgc |
24400850 |
T |
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| Q |
411 |
caaa |
414 |
Q |
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|||| |
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| T |
24400851 |
caaa |
24400854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 41844676 - 41844766
Alignment:
| Q |
182 |
aggtggaattgatgaaggtgtggatcaagaaaatgtttggagacaacccacaacattccaacactatagcaaggatagttaataaacaaca |
272 |
Q |
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| T |
41844676 |
aggtggaattaatgaaggaagggattaagaaaatgtttggagacaacccaaaagaatccaataccattgcaaggattgttaataaacaaca |
41844766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 41844514 - 41844563
Alignment:
| Q |
16 |
tgtgccggtcaagcatgcatagcaattgactatgtcattgtggaaaagag |
65 |
Q |
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| T |
41844514 |
tgtgcaggacaagcatgcatagcaattgattatgtccttgtagaaaagag |
41844563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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