View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12214_low_9 (Length: 430)
Name: NF12214_low_9
Description: NF12214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12214_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 55004329 - 55003957
Alignment:
| Q |
11 |
cagagacggttggacaaatttatttcattctcataatgtttgattaatgtcaaaacaaacaattacaaaggtgttccaacatttgattagataaaattat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55004329 |
cagagacggttggacaaatttatttcattctcataatgtttgattaatgtcaaaacaaacaattacaaaggtgttccaaaatttgattagataaaattat |
55004230 |
T |
|
| Q |
111 |
aataagatgccagagtaacaaaattgataacaattaccttattgctgttgacaaggcctctatgtgacttttcatgtactttattctcttaaaatcatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55004229 |
aataagatgccagagtaacaaaattgataacaattaccttattgctgttgacaaggcctctatgtgacttttcatgtactttattctcttaaaatcatta |
55004130 |
T |
|
| Q |
211 |
agttgatcttccaaagtgagattttgatcatcttgttgggcataccctataaaatatttagattcatcacaaatgtatataaattattgtgactaataaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55004129 |
agttgatcttccaaagtgagattttgatcatcttgttggccataccctataaaatatttagattcataacaaatgtatataaattattgtgactaataaa |
55004030 |
T |
|
| Q |
311 |
gtattagacaaatgtaaatacaatcactctaacattcattttcaaacacttcatcttttaattggtagagttc |
383 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55004029 |
gtattagaaaaatgtaaatacaatcactctaacattctttttcaaacacttcatcttttaattggtagagttc |
55003957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University