View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12215_low_2 (Length: 376)

Name: NF12215_low_2
Description: NF12215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12215_low_2
NF12215_low_2
[»] chr4 (6 HSPs)
chr4 (135-362)||(18343458-18343685)
chr4 (1-127)||(18343719-18343845)
chr4 (166-215)||(506506-506555)
chr4 (166-215)||(18042075-18042124)
chr4 (142-297)||(50593542-50593696)
chr4 (165-203)||(18179696-18179734)
[»] scaffold0002 (5 HSPs)
scaffold0002 (135-362)||(163684-163911)
scaffold0002 (1-92)||(163498-163589)
scaffold0002 (159-361)||(278178-278382)
scaffold0002 (164-206)||(190645-190687)
scaffold0002 (92-127)||(163610-163645)
[»] scaffold0702 (1 HSPs)
scaffold0702 (227-362)||(6873-7008)
[»] chr8 (1 HSPs)
chr8 (227-362)||(35194958-35195093)
[»] scaffold1779 (1 HSPs)
scaffold1779 (160-358)||(48-246)
[»] chr3 (3 HSPs)
chr3 (154-255)||(54630176-54630277)
chr3 (166-215)||(17223707-17223756)
chr3 (164-205)||(13226970-13227011)
[»] chr6 (4 HSPs)
chr6 (135-188)||(31058812-31058865)
chr6 (166-215)||(14543003-14543052)
chr6 (78-127)||(31058724-31058773)
chr6 (165-203)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (166-215)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (166-215)||(6930438-6930487)
chr7 (164-205)||(1399882-1399923)
chr7 (164-205)||(18961072-18961112)
chr7 (164-205)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (166-215)||(19153780-19153829)
[»] scaffold0625 (1 HSPs)
scaffold0625 (164-205)||(8623-8664)
[»] scaffold0330 (2 HSPs)
scaffold0330 (47-92)||(13433-13478)
scaffold0330 (92-127)||(13377-13412)
[»] chr2 (1 HSPs)
chr2 (167-215)||(17442387-17442435)
[»] chr1 (3 HSPs)
chr1 (1-65)||(9857883-9857946)
chr1 (165-203)||(31265991-31266029)
chr1 (166-202)||(49771361-49771397)
[»] scaffold0477 (1 HSPs)
scaffold0477 (165-203)||(8693-8731)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 135 - 362
Target Start/End: Complemental strand, 18343685 - 18343458
Alignment:
Q  135 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 18343586  T
Q  235 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343585 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 18343486  T
Q  335 tcaggcacttgagcccgcttggatcaca 362  Q
    ||||||||||||||||||||||||||||    
T  18343485 tcaggcacttgagcccgcttggatcaca 18343458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 18343845 - 18343719
Alignment:
Q  1 caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343845 caacattatctagttagatatggatagcaaaaatggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaa 18343746  T
Q  101 aatcccgcgattgtattctattttaaa 127  Q
    |||||||||||||||||||||||||||    
T  18343745 aatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 506506 - 506555
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 18042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 50593542 - 50593696
Alignment:
Q  142 tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa 241  Q
    |||||||  |||||||||| | ||| ||||||| ||||  |||||||| | || | ||| |||||||||||| ||||||| ||| |||||  ||||||||    
T  50593542 tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa 50593640  T
Q  242 ccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct 297  Q
    |||| |||||||||||| |  ||||||||||| ||||| ||| ||| |||||||||    
T  50593641 cccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct 50593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
Q  165 gaggagccgtatgaggtgaaaatctcatgtacggttctg 203  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttctg 18179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 135 - 362
Target Start/End: Original strand, 163684 - 163911
Alignment:
Q  135 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca 163783  T
Q  235 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 334  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  163784 actataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaatatgttct 163883  T
Q  335 tcaggcacttgagcccgcttggatcaca 362  Q
    | ||||||||||||||||||||||||||    
T  163884 ttaggcacttgagcccgcttggatcaca 163911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 163498 - 163589
Alignment:
Q  1 caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaata 92  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  163498 caacattatctagttagatatggatagcaaaaatggtctataaaaatccatatttggttttatatccaagcaagatatacaaatttctaata 163589  T

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Target: scaffold0002; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 361
Target Start/End: Complemental strand, 278382 - 278178
Alignment:
Q  159 attcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaata--accatcaactataaccccaaaagaaccag 256  Q
    ||||||||||||| | |||||  |||| |||||||| | ||| || | ||||||||||| | ||||| |  |||||| ||||||||||||||||||||||    
T  278382 attcgcgaggagctggatgagaagaaactctcatgtccagttttggagtagagatggaactaagaaagagaaccatcgactataaccccaaaagaaccag 278283  T
Q  257 attccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttgg 356  Q
    ||| || ||||||||| |||||||||||||||||||| |||  ||||| |||   ||||  || || | |||||||||||| |||||||| |||||||||    
T  278282 atttcgcaaacaacatagaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtagatatgctcttcaagcacttgaacccgcttgg 278183  T
Q  357 atcac 361  Q
    |||||    
T  278182 atcac 278178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 190645 - 190687
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  92 atgtcaaaaaatcccgcgattgtattctattttaaa 127  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

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Target: scaffold0702 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 6873 - 7008
Alignment:
Q  227 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 326  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6873 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 6972  T
Q  327 tatgctcttcaggcacttgagcccgcttggatcaca 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  6973 tatgctcttcaggcacttgagcccgcttggatcaca 7008  T

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Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 35194958 - 35195093
Alignment:
Q  227 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 326  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35194958 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 35195057  T
Q  327 tatgctcttcaggcacttgagcccgcttggatcaca 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  35195058 tatgctcttcaggcacttgagcccgcttggatcaca 35195093  T

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Target: scaffold1779 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 358
Target Start/End: Original strand, 48 - 246
Alignment:
Q  160 ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagatt 259  Q
    |||||||||||| | |||||  |||| |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  48 ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatt 147  T
Q  260 ccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggat 358  Q
     |||||||||||| ||||||||||||| || | | | ||||||||||||   ||||  ||||| | |||||||||||| |||||||| |||||||||||    
T  148 tcgtaaacaacatagaggaagaatgaaggggatatcttatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggat 246  T

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Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 54630277 - 54630176
Alignment:
Q  154 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaac 253  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaagaac 54630178  T
Q  254 ca 255  Q
    ||    
T  54630177 ca 54630176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 17223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 13227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  135 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 14543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  78 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
Q  165 gaggagccgtatgaggtgaaaatctcatgtacggttctg 203  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttctg 4639423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg 265168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg 6930487  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 205  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta 1399923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18993073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg 19153780  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
Q  164 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 8623  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
Q  47 tccatatttggttctatatcaaagcaagatatacaaatttctaata 92  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13478 tccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  92 atgtcaaaaaatcccgcgattgtattctattttaaa 127  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
Q  167 ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 215  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg 17442387  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9857883 - 9857946
Alignment:
Q  1 caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatat 65  Q
    |||||||||||||||||| ||| |||||||||| |||||||| |||||||||||| |||||||||    
T  9857883 caacattatctagttagacatg-atagcaaaaatggtctatacgaatccatatttcgttctatat 9857946  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
Q  165 gaggagccgtatgaggtgaaaatctcatgtacggttctg 203  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttctg 31265991  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
Q  166 aggagccgtatgaggtgaaaatctcatgtacggttct 202  Q
    |||||||||||||||||||||||| |||||| |||||    
T  49771397 aggagccgtatgaggtgaaaatcttatgtacagttct 49771361  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
Q  165 gaggagccgtatgaggtgaaaatctcatgtacggttctg 203  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttctg 8693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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