View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12216_high_1 (Length: 340)
Name: NF12216_high_1
Description: NF12216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12216_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 35631329 - 35631008
Alignment:
| Q |
1 |
taatactgaaacgtataactgttcttcctctttaatttgttaaattttcaccggaaattctgataccttagcaaacttaagtcttcttttaccctcttcc |
100 |
Q |
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| T |
35631329 |
taatactgaaacgtataactgttcttcctctttaatttgttagattttcaccggaaattctgataccttagcaaacttaagtcttcttttaccttcttcc |
35631230 |
T |
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| Q |
101 |
tactttatatgaattttaatttcaagggtttctcagttattgaatttcaatccaacaatggtggcagcagaaacatgtcactctaaaattggtgatttca |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35631229 |
tactttatatgaattttcatttcaagggtttctcagttattgaatttcaatccaacaatggtggcagcagaaacatgtcactctaaaattggtgatttca |
35631130 |
T |
|
| Q |
201 |
nnnnnnnnnnnnacagaagaaaatttggaatttggatcctatgcagtcgtcaagggttcccgcattcatgcatgacattcttgaacatttgatcaagatt |
300 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
35631129 |
ttttttctttttacagaagaaaatttggaattcggatcctatgcagttgtcaagggttcccgcattcatgcaggacattcgtgaacatttgatcaagatt |
35631030 |
T |
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| Q |
301 |
agacagtccaaaaaagtatatt |
322 |
Q |
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||||||||||||||| |||||| |
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| T |
35631029 |
agacagtccaaaaaattatatt |
35631008 |
T |
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