View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12216_high_2 (Length: 258)
Name: NF12216_high_2
Description: NF12216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12216_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 31004536 - 31004304
Alignment:
| Q |
9 |
gagatgaaggttaaccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagatatggagcttgcataggttcatcatagggttgttgt |
108 |
Q |
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| T |
31004536 |
gagatgaaggttaaccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagataaggagcttgcataggttcatcattgggttgatgt |
31004437 |
T |
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| Q |
109 |
ggccccttgcagggtaaggcatggctagtatgtggttgaaggaagttggtggtgattccattgcaattttgggagaggaatggttgtgaggtttgatatt |
208 |
Q |
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| T |
31004436 |
ggcctcttgcaggggaaggcatggctagtatgtggttgaagaaagttggtggtgattccattgcaattttgggagaggaatggtcgtgaggtttgatatt |
31004337 |
T |
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| Q |
209 |
tttgggtagaagataaaacttgtcgtgatattt |
241 |
Q |
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| T |
31004336 |
tttgggtagaagataaaacttgtcgtgatattt |
31004304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 30993615 - 30993523
Alignment:
| Q |
99 |
gggttgttgtggccccttgcagggtaaggcatggctagtatgtggttgaaggaagttggtggtgattccattgcaattttgggagaggaatgg |
191 |
Q |
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| T |
30993615 |
gggttgatgtgtcctcttgaagggtaaggcatggccagtatatggttgaaggaagttggtggtgattccattgcaattttgagagagaaatgg |
30993523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 31009545 - 31009456
Alignment:
| Q |
23 |
ccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagatatggagcttgcataggttcatcatagggttgttgtggcc |
112 |
Q |
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| T |
31009545 |
ccattcttctgtgacaacaaaggtaacaacgatgttggggttgttggagatgaggagtttgcataggttcatcattgggttgatgtggcc |
31009456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 32077168 - 32077341
Alignment:
| Q |
9 |
gagatgaaggttaaccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagatatggagcttgcataggttcatcatagggttgttgt |
108 |
Q |
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| T |
32077168 |
gagatgaagcttagccattcttcagtgactacaaaggaaacatgaatgttgctattgttggagacaaggagtttgcagaggttcatcatagggttgatat |
32077267 |
T |
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| Q |
109 |
ggccccttgcagggtaaggcatggctagtatgtggttgaaggaagttggtggtgattccattgcaattttggga |
182 |
Q |
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| T |
32077268 |
tgcctcgtacaggaaatggcatggccaccatgtggcagagggaagttggtagggcttccatagcaattttggga |
32077341 |
T |
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