View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12217_low_2 (Length: 285)
Name: NF12217_low_2
Description: NF12217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12217_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 15088595 - 15088332
Alignment:
| Q |
8 |
gaacctgtgagacaatttcctctacacgccgtgaaaccaatgagaagcgacgaatcagtctcagggtaataagttaataactgcgtatgatccaatgtca |
107 |
Q |
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| T |
15088595 |
gaacctgagagacaatttcctctacacgccgtgaaaccaatgagaagcgacgaatcagtctcagggtaataagttaataactgcgtatgatccaatgtca |
15088496 |
T |
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| Q |
108 |
acatagtttcattcccttgacaactatcaagatccaccttcctcctacacccttttctaataccatcaatcatctcgaaattctccgaaggacaaccaca |
207 |
Q |
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| T |
15088495 |
acatagtttcattcccttgacaactatcaagatccactttcctcctacacccttttctaataccatcaatcatctcgaaattctccgaaggacaaccaca |
15088396 |
T |
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| Q |
208 |
aatagggtttgtatcattataactgcaaataccatagtttccgcaaaaagcataaaccttacac |
271 |
Q |
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| T |
15088395 |
aatagggttcgtatcattataactgcaaataccatagtttccgcaaaaagcataaaccttacac |
15088332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 76 - 271
Target Start/End: Complemental strand, 15084701 - 15084509
Alignment:
| Q |
76 |
ataagttaataactgcgtatgatccaatgtcaacatagtttcattcccttgacaactatcaagatccaccttcctcctacacccttttctaataccatca |
175 |
Q |
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| T |
15084701 |
ataagtcaaaaactgtgtatgatccaactccagcatagtctcattccctcgacaattagcaagatccaccttcctcctacacccttttcca---ccatca |
15084605 |
T |
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| Q |
176 |
atcatctcgaaattctccgaaggacaaccacaaatagggtttgtatcattataactgcaaataccatagtttccgcaaaaagcataaaccttacac |
271 |
Q |
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| T |
15084604 |
ttcacttcgaaattctccgaaggacacccacaaatcggattcgtatcattataactacaaataccataattcccacaaaaagcataaacctgacac |
15084509 |
T |
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