View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12217_low_3 (Length: 232)
Name: NF12217_low_3
Description: NF12217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12217_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 696777 - 696575
Alignment:
| Q |
22 |
acacgaatttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctc |
121 |
Q |
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| T |
696777 |
acacaaatttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctc |
696678 |
T |
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| Q |
122 |
gaatgtgagcgtacttatgtctgtagtttaactgaccattacttggaagggaaacttttgtggcccttggttgaattgagtttggtttaacacaggttct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
696677 |
gaatgtgagcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggtttt |
696578 |
T |
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| Q |
222 |
gct |
224 |
Q |
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||| |
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| T |
696577 |
gct |
696575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 765075 - 764873
Alignment:
| Q |
22 |
acacgaatttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctc |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
765075 |
acacaaatttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctc |
764976 |
T |
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| Q |
122 |
gaatgtgagcgtacttatgtctgtagtttaactgaccattacttggaagggaaacttttgtggcccttggttgaattgagtttggtttaacacaggttct |
221 |
Q |
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| T |
764975 |
gaatgtgagcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggtttt |
764876 |
T |
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| Q |
222 |
gct |
224 |
Q |
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||| |
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| T |
764875 |
gct |
764873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 36985030 - 36985078
Alignment:
| Q |
176 |
cttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36985030 |
cttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
36985078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 37010469 - 37010517
Alignment:
| Q |
176 |
cttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37010469 |
cttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
37010517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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