View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12218_high_4 (Length: 560)
Name: NF12218_high_4
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12218_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Original strand, 50016699 - 50017216
Alignment:
| Q |
15 |
cagagacataagtgagggtacaacaacaataagggagggtgtgaattggaattgggaggaatatatgccatggttgggaggtgttgtggatgaacaaatg |
114 |
Q |
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| T |
50016699 |
cagagacataagtgagggtacaacaacaataagggagggtgtgaattggaattgggaggaatatatgccatggttgggaggtgttgtggatgaacaaatg |
50016798 |
T |
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| Q |
115 |
tcatggggttcaacttggttccccgggtgggatatggatttcatgggtgaagcttttaataatgctctttataatgatgttgtttgggatgatgatatct |
214 |
Q |
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| T |
50016799 |
tcatggggttcaacttggttccccgggtgggatatggatttcatgggtgaagcttttaataatgctctttataatgatgttgtttgggaagatgatatct |
50016898 |
T |
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| Q |
215 |
ggaatctcaaaaatcaaattccaattccattacatggaaagagatttgaattggagtagaagaggtacaagtttttcagcttcgtttaggaaatttcact |
314 |
Q |
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| T |
50016899 |
ggaatctcaaaaatcaaattccaattccattacatggaaagagatttgaattggagtagaagaggtacaagtttttcagcttcgtttaggaaatttcact |
50016998 |
T |
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| Q |
315 |
atttttcatgtcaattttagaaatatatatgtgaaattcacaagtagatgtcaatgttatataattaacttacccaagctatctaattataagcatcttt |
414 |
Q |
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| T |
50016999 |
a-ttttcatgtcaattttagaaatatatatgtgaaattcactagt---------tattatataattaacttacccaagctatctaattataagcatcttt |
50017088 |
T |
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| Q |
415 |
gtttgagcttaattatatttacacttgtgtgaacaaagagtgattaatggatccattagaagcaatcaactgatatttatctctagctgctgaaatattt |
514 |
Q |
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| T |
50017089 |
gtttgagcttaattatatttacacttgtgtgaacaaagaatgattaatggatccattagaagcaagcaactgatatttatctctagctgctgaaatattt |
50017188 |
T |
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| Q |
515 |
ttctattcgactttatttatatcttagt |
542 |
Q |
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| T |
50017189 |
ttctattcgactttatttatatcttagt |
50017216 |
T |
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