View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12218_high_9 (Length: 307)

Name: NF12218_high_9
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12218_high_9
NF12218_high_9
[»] chr5 (5 HSPs)
chr5 (13-284)||(15067556-15067826)
chr5 (171-246)||(17495756-17495831)
chr5 (153-254)||(32261353-32261454)
chr5 (199-247)||(11317776-11317824)
chr5 (154-233)||(40482337-40482417)
[»] chr2 (8 HSPs)
chr2 (142-246)||(37610644-37610748)
chr2 (133-246)||(17251325-17251438)
chr2 (182-254)||(11319163-11319235)
chr2 (172-245)||(17034352-17034425)
chr2 (172-245)||(17078080-17078153)
chr2 (172-245)||(17089039-17089112)
chr2 (140-216)||(17248070-17248146)
chr2 (132-212)||(5849966-5850046)
[»] chr3 (6 HSPs)
chr3 (130-253)||(43012889-43013012)
chr3 (175-254)||(20824724-20824803)
chr3 (176-218)||(20002023-20002065)
chr3 (189-239)||(36639333-36639383)
chr3 (132-254)||(29125675-29125796)
chr3 (143-211)||(54696285-54696353)
[»] chr1 (3 HSPs)
chr1 (154-253)||(35113214-35113313)
chr1 (139-254)||(12305173-12305287)
chr1 (172-240)||(10894135-10894203)
[»] chr4 (4 HSPs)
chr4 (175-246)||(46144923-46144994)
chr4 (136-254)||(22398333-22398451)
chr4 (154-207)||(27530868-27530921)
chr4 (132-216)||(38839322-38839406)
[»] chr7 (6 HSPs)
chr7 (173-270)||(7371905-7372005)
chr7 (177-245)||(45960521-45960589)
chr7 (172-246)||(7359837-7359914)
chr7 (154-218)||(43072434-43072498)
chr7 (154-271)||(1718736-1718854)
chr7 (154-218)||(29700066-29700130)
[»] chr8 (6 HSPs)
chr8 (148-216)||(8007728-8007795)
chr8 (143-206)||(28401416-28401479)
chr8 (154-246)||(29038907-29038999)
chr8 (175-237)||(8050898-8050958)
chr8 (197-240)||(33431346-33431389)
chr8 (177-254)||(1171069-1171148)
[»] chr6 (3 HSPs)
chr6 (177-240)||(8119717-8119780)
chr6 (133-196)||(10744189-10744252)
chr6 (152-213)||(8115769-8115830)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 15067556 - 15067826
Alignment:
Q  13 gagacaccacaaatatctggaataacaatttggacatttgccgattgagccaaaacataaaaatgaaaatattatatttcttatacatagacacacacat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  15067556 gagacaccacaaatatctggaataacaatttggacatttgccgattgagccaaaagatacaaatgaaaatattatatttcttatacatagacacacacat 15067655  T
Q  113 atatttataatttacgcaggtagttggtgttgtttt-ttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaat 211  Q
    ||  |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15067656 at--ttataatttatgcaggtagttgatgttgtttttttattattgaaatgcataattccaagagtcatttttaattcatgagaattagagaaaatcaat 15067753  T
Q  212 tgtgtatagtttctctaatattcaaaattgattttctaatttagaatcgatgacatattattgtgcttttatc 284  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15067754 tgtgtgtagtttctctaatattcaaaattgattttctaatttagaattgatgacatattattgtgcttttatc 15067826  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 17495756 - 17495831
Alignment:
Q  171 taagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgatttt 246  Q
    |||||||| |||||||||||||||||||  | |||||||| ||||| || ||| |||||||||||||||| |||||    
T  17495756 taagagtcgtgtttaattcatgagaattgcacaaaatcaaatgtgtgtaatttatctaatattcaaaattaatttt 17495831  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 32261353 - 32261454
Alignment:
Q  153 tattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattttctaatt 252  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||| | | || ||||||||||| |  ||  ||||||| | |||||||||||| |||||    
T  32261353 tattgaaatccatgattctaagagtaatgtttaattcaagagaataaaataatatcaattgtgtgtgattcatctaatacttaaaattgattttttaatt 32261452  T
Q  253 ta 254  Q
    ||    
T  32261453 ta 32261454  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 11317776 - 11317824
Alignment:
Q  199 agagaaaatcaattgtgtatagtttctctaatattcaaaattgattttc 247  Q
    |||||||||||||  ||| || ||| |||||||||||||||||||||||    
T  11317776 agagaaaatcaatcatgtgtaatttatctaatattcaaaattgattttc 11317824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 40482337 - 40482417
Alignment:
Q  154 attgaaatgcataattctaag-agtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatatt 233  Q
    |||||||||||| | || ||| ||||||||||||||||| ||||   ||||||||||| |||||||  |||||| ||||||    
T  40482337 attgaaatgcatgactcaaaggagtcatgtttaattcataagaacgggagaaaatcaaatgtgtatgctttctcaaatatt 40482417  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 37610644 - 37610748
Alignment:
Q  142 ttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattg 241  Q
    ||||| ||||| |||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||| |  ||| || ||||||||||||||    
T  37610644 ttgttgtttatgattgaaatgcatgattccaagagtcacgtttaattcatgagaattagggaaaatcaattgtgtgtgatttgtccaatattcaaaattg 37610743  T
Q  242 atttt 246  Q
    |||||    
T  37610744 atttt 37610748  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 17251438 - 17251325
Alignment:
Q  133 tagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatat 232  Q
    |||||||||||| | ||| | ||| |||||||| | ||||||||||||||||||||||| ||||| ||||||| |||||||||| |  ||| | |||| |    
T  17251438 tagttggtgttgatgtttgtgattcaaatgcatgactctaagagtcatgtttaattcattagaatgagagaaattcaattgtgtgtgatttatttaatgt 17251339  T
Q  233 tcaaaattgatttt 246  Q
    ||||| ||||||||    
T  17251338 tcaaatttgatttt 17251325  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 11319235 - 11319163
Alignment:
Q  182 tttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattttctaattta 254  Q
    |||||||||||||||| ||||||| ||||||||||||  ||| ||||| |||||||||| ||||| |||||||    
T  11319235 tttaattcatgagaatgagagaaattcaattgtgtatgatttatctaacattcaaaattaattttttaattta 11319163  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 17034352 - 17034425
Alignment:
Q  172 aagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattt 245  Q
    ||||||| ||||||||||| |||||| |||||||||||||| ||| || ||| |||||| || ||||| |||||    
T  17034352 aagagtcgtgtttaattcacgagaatgagagaaaatcaattttgtctattttatctaattttaaaaatagattt 17034425  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 17078080 - 17078153
Alignment:
Q  172 aagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattt 245  Q
    ||||||| ||||||||||| |||||| |||||||||||||| ||| || ||| |||||| || ||||| |||||    
T  17078080 aagagtcgtgtttaattcacgagaatgagagaaaatcaattttgtctattttatctaattttaaaaatagattt 17078153  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 17089039 - 17089112
Alignment:
Q  172 aagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattt 245  Q
    ||||||| ||||||||||| |||||| |||||||||||||| ||| || ||| |||||| || ||||| |||||    
T  17089039 aagagtcgtgtttaattcacgagaatgagagaaaatcaattttgtctattttatctaattttaaaaatagattt 17089112  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 17248146 - 17248070
Alignment:
Q  140 tgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgt 216  Q
    ||||||| ||| || ||||||||||| | ||||||| ||||||||| ||||| |||||  |||||| ||||||||||    
T  17248146 tgttgttgttttttgttgaaatgcatgactctaagattcatgtttagttcattagaatgggagaaattcaattgtgt 17248070  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 5850046 - 5849966
Alignment:
Q  132 gtagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaatt 212  Q
    |||||||||| |||| ||| | |||||||||||| ||||| | | |||| ||||||| |||||||| |  |||||||||||    
T  5850046 gtagttggtggtgttctttgtaattgaaatgcatgattcttataatcatatttaatttatgagaatgatggaaaatcaatt 5849966  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 43012889 - 43013012
Alignment:
Q  130 aggtagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaa 229  Q
    ||||||||||| || ||  |||| |||||||||||| |  | ||||||||||||||||||||||| |||||| ||||||||||| || |  ||| |||||    
T  43012889 aggtagttggtatttttgcttatgattgaaatgcatgaaccaaagagtcatgtttaattcatgagtattagataaaatcaattgcgtgttatttatctaa 43012988  T
Q  230 tattcaaaattgattttctaattt 253  Q
    |||||||| |||||||| ||||||    
T  43012989 tattcaaatttgattttttaattt 43013012  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 20824724 - 20824803
Alignment:
Q  175 agtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattttctaattta 254  Q
    ||||||| |||||| |||||||| |||||||||||||||||| |  |||    ||||||||||||||||||| |||||||    
T  20824724 agtcatgcttaatttatgagaataagagaaaatcaattgtgtgtgatttactgaatattcaaaattgattttttaattta 20824803  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 20002065 - 20002023
Alignment:
Q  176 gtcatgtttaattcatgagaattagagaaaatcaattgtgtat 218  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  20002065 gtcatgtttaattcatgagcatgagagaaaatcaattgtgtat 20002023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 36639383 - 36639333
Alignment:
Q  189 catgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaat 239  Q
    |||||||| |||||||||||||||||||||| ||| |||||||| ||||||    
T  36639383 catgagaactagagaaaatcaattgtgtataatttatctaatatacaaaat 36639333  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 29125796 - 29125675
Alignment:
Q  132 gtagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaata 231  Q
    |||||||||| | || ||| | ||||||||| || | || ||||||| | |||||||||||||||| ||| |||||||||| ||| |  ||| |||||||    
T  29125796 gtagttggtgatattctttttaattgaaatgtatgactccaagagtcttatttaattcatgagaataaga-aaaatcaattttgtgtgatttatctaata 29125698  T
Q  232 ttcaaaattgattttctaattta 254  Q
    || |||||| || || |||||||    
T  29125697 tttaaaattaatattttaattta 29125675  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 54696353 - 54696285
Alignment:
Q  143 tgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaat 211  Q
    |||| ||| |||||||||| | | |||| ||||||| ||||||||||||||| || | |||||||||||    
T  54696353 tgttgttttttattgaaatacttgattccaagagtcgtgtttaattcatgaggatgatagaaaatcaat 54696285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 35113214 - 35113313
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattttctaattt 253  Q
    |||| ||||||| ||| ||||| ||||||| |||| |||||||| |||||||| ||||  |||||  ||| |||||||||||||||||||||| ||||||    
T  35113214 attgcaatgcatgattataagaatcatgttcaatttatgagaatgagagaaaagcaatcatgtatgatttatctaatattcaaaattgattttttaattt 35113313  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 12305173 - 12305287
Alignment:
Q  139 gtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattag-agaaaatcaattgtgtatagtttctctaatattcaaa 237  Q
    ||||||||||||  |||||||||  || | || |||||||||||||||||||||||||| || | ||||| |||||  | |  ||| |||||||| ||||    
T  12305173 gtgttgtttttt--tattgaaataaatgactccaagagtcatgtttaattcatgagaatgagaaaaaaatgaattgcatgtgatttatctaatatccaaa 12305270  T
Q  238 attgattttctaattta 254  Q
     |||||||| |||||||    
T  12305271 tttgattttttaattta 12305287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 10894135 - 10894203
Alignment:
Q  172 aagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaatt 240  Q
    ||||||||||||||||| |||   ||||||||| ||||||||||| |  ||| ||||||||| ||||||    
T  10894135 aagagtcatgtttaattgatgcatattagagaatatcaattgtgtgtgatttgtctaatattaaaaatt 10894203  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 46144923 - 46144994
Alignment:
Q  175 agtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgatttt 246  Q
    ||||||||||| ||| |||| || ||||||||||||||||||||  ||| |||||||||||||||| |||||    
T  46144923 agtcatgtttagttcgtgagcatgagagaaaatcaattgtgtatgatttatctaatattcaaaattaatttt 46144994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 22398333 - 22398451
Alignment:
Q  136 ttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattca 235  Q
    ||||||||| | ||||| |||||||||||| | |  || | |||| ||||||| |||||||| ||||||||||||| |||| |  ||| |||||| ||||    
T  22398333 ttggtgttgctctttatgattgaaatgcatgagttcaaaaatcatatttaattaatgagaatgagagaaaatcaatggtgtgtgatttatctaattttca 22398432  T
Q  236 aaattgattttctaattta 254  Q
    ||||||| ||| |||||||    
T  22398433 aaattgaatttttaattta 22398451  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 27530921 - 27530868
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaat 207  Q
    |||||||||||| | |  |||| ||||||||||||||||||||| |||||||||    
T  27530921 attgaaatgcatgacttcaagaatcatgtttaattcatgagaataagagaaaat 27530868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 38839406 - 38839322
Alignment:
Q  132 gtagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgt 216  Q
    |||||||||| |||| ||| | |||||| ||||| |||  ||||||||||||||||| |||| | | ||| ||||| ||||||||    
T  38839406 gtagttggtgatgttctttgtgattgaattgcatgatttcaagagtcatgtttaattaatgatagtaagataaaattaattgtgt 38839322  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 7371905 - 7372005
Alignment:
Q  173 agagtcatgtttaattcatgagaattagagaaaatcaattgtgt---atagtttctctaatattcaaaattgattttctaatttagaatcgatgacatat 269  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||   ||  ||| |||||||| ||||||||| ||| ||||||| ||| ||||| ||||    
T  7371905 agagtcatgtttaattcataagaataagagaaaatcaattttgtgtgattatttgtctaatatgcaaaattgaatttttaatttaaaattgatgatatat 7372004  T
Q  270 t 270  Q
    |    
T  7372005 t 7372005  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 45960521 - 45960589
Alignment:
Q  177 tcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgattt 245  Q
    |||| |||||||||||| ||| |||||||| ||||||| |||  ||| |||||||||||||||||||||    
T  45960521 tcatatttaattcatgaaaatgagagaaaaccaattgtttatgatttatctaatattcaaaattgattt 45960589  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 7359837 - 7359914
Alignment:
Q  172 aagagtcatgtttaattcatgagaattagagaaaatcaa--ttgtgt-atagtttctctaatattcaaaattgatttt 246  Q
    |||||||||||||||||||||||||| |||||||| |||  |||||| ||  ||| |||||||| |||||||||||||    
T  7359837 aagagtcatgtttaattcatgagaataagagaaaaacaactttgtgtgattatttatctaatatgcaaaattgatttt 7359914  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 43072498 - 43072434
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtat 218  Q
    ||||||||| || |||| || | |||||||||||||||||||||| ||| ||||||||| |||||    
T  43072498 attgaaatgtatgattccaacaatcatgtttaattcatgagaattggaggaaatcaattctgtat 43072434  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 1718854 - 1718736
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattga-ttttctaatt 252  Q
    ||||||||| || | ||| ||||||||||||  ||||||||||| |||| |||| | |||| |||  ||| ||||||||||| |||||| ||||  ||||    
T  1718854 attgaaatgtatgactctgagagtcatgtttgtttcatgagaatgagaggaaatgagttgtctatgatttatctaatattcataattgagtttttaaatt 1718755  T
Q  253 tagaatcgatgacatatta 271  Q
    || ||| ||||| ||||||    
T  1718754 taaaattgatgatatatta 1718736  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 29700130 - 29700066
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtat 218  Q
    |||||||||||| ||   ||||||||| || ||||||||| ||| |||||||||||||| |||||    
T  29700130 attgaaatgcatgatatcaagagtcattttgaattcatgaaaataagagaaaatcaattatgtat 29700066  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 8007728 - 8007795
Alignment:
Q  148 tttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgt 216  Q
    ||||| |||||||| ||| |||| || |||||||||||||||||||| || ||||||||||||||||||    
T  8007728 tttatgattgaaatacattattcaaa-agtcatgtttaattcatgagcatgagagaaaatcaattgtgt 8007795  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 28401416 - 28401479
Alignment:
Q  143 tgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaa 206  Q
    |||| ||| |||||||||||||||| |||||| || ||||||||||||||||||| ||| ||||    
T  28401416 tgttgttttttattgaaatgcataactctaagcgtaatgtttaattcatgagaatgagaaaaaa 28401479  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 29038907 - 29038999
Alignment:
Q  154 attgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaattgatttt 246  Q
    |||||||||||| | || | ||||  |||||||||||||||||| ||| |||||||||| ||| |  ||| |||||||| ||||||| |||||    
T  29038907 attgaaatgcatgactccatgagttgtgtttaattcatgagaatgagataaaatcaattatgtgtgatttatctaatatccaaaatttatttt 29038999  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 8050898 - 8050958
Alignment:
Q  175 agtcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaa 237  Q
    |||||| ||||||||||||| || |||||||||||||||||  | |||| |||||||||||||    
T  8050898 agtcatttttaattcatgagcatgagagaaaatcaattgtg--tggtttatctaatattcaaa 8050958  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 33431389 - 33431346
Alignment:
Q  197 ttagagaaaatcaattgtgtatagtttctctaatattcaaaatt 240  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||    
T  33431389 ttagagaaaatcaattgtgtatgatttatctaatattcaaaatt 33431346  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 1171069 - 1171148
Alignment:
Q  177 tcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctct--aatattcaaaattgattttctaattta 254  Q
    ||||||||||||| ||||||| |||||||||||||| ||| |  ||| |||   |||||||||| ||||||| |||||||    
T  1171069 tcatgtttaattcttgagaatgagagaaaatcaattatgtttgatttatcttatatattcaaaactgattttataattta 1171148  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 8119717 - 8119780
Alignment:
Q  177 tcatgtttaattcatgagaattagagaaaatcaattgtgtatagtttctctaatattcaaaatt 240  Q
    |||||||||||||| |||||| ||||||||| |||||| | || ||| ||| ||||||||||||    
T  8119717 tcatgtttaattcacgagaatgagagaaaattaattgtatttaatttatctgatattcaaaatt 8119780  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 10744189 - 10744252
Alignment:
Q  133 tagttggtgttgttttttattattgaaatgcataattctaagagtcatgtttaattcatgagaa 196  Q
    ||||| ||||| || ||| | |||||||||||| | || |||||||||||||||||||||||||    
T  10744189 tagtttgtgttattgtttgtgattgaaatgcatgactccaagagtcatgtttaattcatgagaa 10744252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 8115769 - 8115830
Alignment:
Q  152 ttattgaaatgcataattctaagagtcatgtttaattcatgagaattagagaaaatcaattg 213  Q
    |||||||||||||| | || || | ||||||||| ||||||||||| ||||||||| |||||    
T  8115769 ttattgaaatgcatcactccaaaaatcatgtttatttcatgagaatgagagaaaattaattg 8115830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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