View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12218_low_1 (Length: 738)

Name: NF12218_low_1
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12218_low_1
NF12218_low_1
[»] chr7 (1 HSPs)
chr7 (17-721)||(44528347-44529052)


Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 17 - 721
Target Start/End: Complemental strand, 44529052 - 44528347
Alignment:
Q  17 gactaaagagactatttgctcatttctttataacacttgtctttttatcagataaaattcgtgtgtatctcatcactttatttgtgttccatttataaag 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  44529052 gactaaagagactatttgttcatttctttataacacttgtctttttatcagataaaatttgtatgtatctcatcactttatttgtgttccatttataaag 44528953  T
Q  117 tgtaaaacatgcatgaatctcacatgatgagtgaatgttaaa-agagtattagaaaaggcgttttcataacactcatcttttttctaaattatcattcat 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44528952 tgtaaaacatgcatgaatctcacatgatgagtgaatgttaaagagagtattagaaaaagcgttttcataacactcatcttttttctaaattatcattcat 44528853  T
Q  216 aatctctctatcacaaaggttcaatccgtaaacatttcatctccttgctagcaattcaaaatcaacatacattttagacaataaagctaacaatattttt 315  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44528852 aatctctctatcacaaaggttcaatccgcaaacatttcatctccttgctagcaattcaaaatcaacatacattttagacaataaagctaacaatattttt 44528753  T
Q  316 -aaacaacatttcatacagatcacaatggacatgagattgccttatatgtcaatgttgtaagacaatgcatgcgttcttcttacgaggaagacttagaag 414  Q
     ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44528752 aaaaaaacatttcatacagatcacaatggacatgagattgtcttatatgtcaatgttgtaagacaatgcatgcgttctccttacgaggaagacttagaag 44528653  T
Q  415 caacttattgaatcttaaggtacttacaaattaatctcataaaagacttgtaacaacgagcgatannnnnnnatctttaaatatgcagattgagcaagaa 514  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||    
T  44528652 caacttattgaatgttaaggtacttacaaattaatctcataaaagacttgtaacaacgagcgacatttttttatctttaaatatgcagattgagcaagaa 44528553  T
Q  515 caacaaatccattactttgatgttttccttctatgtcactgatgaatttgttgtgagtgctcatttcatgtaaagataaagacacctcttttattctttt 614  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44528552 caacaaatccattac-ttgatgttttccttctatgtcactgatgaatttgttgtgagtgctcatttcatgtaaagataaagacacctcttttattctttt 44528454  T
Q  615 ccttaaagtgcaaatcttttctgagtaaacgcatgaaagagtgctcactgctcaatccgcgtatatttacattttaagtacatttacatctcgcaccctg 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44528453 ccttaaagtgcaaatcttttctgagtaaacgcatgaaagagtgctcactgctcaatccgcgtatatttacattttaagtacatttacatctcgcaccctg 44528354  T
Q  715 gatatat 721  Q
    |||||||    
T  44528353 gatatat 44528347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University