View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12218_low_2 (Length: 577)
Name: NF12218_low_2
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12218_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 71 - 560
Target Start/End: Complemental strand, 40145865 - 40145376
Alignment:
| Q |
71 |
gagaaactcaaactaaggaattaatgagattaaaaacttattttatatatctaatatgtgtgttgtgtataaattgtttttaaaaacaacacctaaactt |
170 |
Q |
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| T |
40145865 |
gagaaactcaaactaaggaattaatgagattaaaaacatattttatatatctaatatgtgtgttgtgtataaattgtttttaaaaacaacacctaaactt |
40145766 |
T |
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| Q |
171 |
gaattttattcaaaggcgtggcttgttcttctgcacatgtagtatgtcaatcagataccgaatcaaattggcatgcctttcaaaattgtgcggacagcgt |
270 |
Q |
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| T |
40145765 |
gaattttattcaaaggcgtggcttgttcttctgcacatgtagtatgtcaatcagataccgaatcaaattggcatgcctttcaaaattgtgcggacagcgt |
40145666 |
T |
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| Q |
271 |
tgcatgttgtagaaggttttgatgatgtttacaatggattctgaagtatattatcctagaacaaatcacaaatgtgtttctttgcgataacttcttgaag |
370 |
Q |
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| T |
40145665 |
tgcatgttgtagaaggttttgatgatgtttacaatggattctgaagtatattatcctagaacaaatcacaaatgtgtttctttgcgataacttcttgaag |
40145566 |
T |
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| Q |
371 |
cattagtatctagatactgtgttttacactctctttccatttgatgatgctgaagaatccataaatcccaacatatagaccaattctttgacttgtataa |
470 |
Q |
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| T |
40145565 |
cattagtatctagatactgtgttttacactctctttccatttgatgatgctgaagaatccataaatcccaacatatagaccaattctttgacttgtataa |
40145466 |
T |
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| Q |
471 |
aatcacatgtataagagtcatttgtagggtggaatagagtagatgatgttgaggttgacaacgatcactgataacatagaactcaaaatg |
560 |
Q |
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| T |
40145465 |
aatcacatgtataagagtcatttgtagggtggaatagagaagatgatgttgaggttgacaacgatcactgataacatagaactcaaaatg |
40145376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40145930 - 40145889
Alignment:
| Q |
7 |
tggagaagcagagacgacgagtgagttcttttggttacacaa |
48 |
Q |
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| T |
40145930 |
tggagaagaagagacgacgagtgagttattttggttacacaa |
40145889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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