View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12218_low_5 (Length: 544)
Name: NF12218_low_5
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12218_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 33112012 - 33112524
Alignment:
| Q |
18 |
aggtttgtgaacaactattggtaatgtacgaagaatgcttacaaggagattttagctctgtcaagatactcagggaagccagcaaatcttgggtggggtg |
117 |
Q |
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| T |
33112012 |
aggtttgtgaacaactattggtaatgtacgaagaatgcttacaaggagattttagctctgtcaagatactcagggaagccagcaaatcttgggtggggtg |
33112111 |
T |
|
| Q |
118 |
ctcaacctcatctaatgcagcagtaagtaaacaagtttgagataaatcctcataattattttggaatggaactgaagacttttatatcattgagttaatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33112112 |
ctcaacctcatctaatgcagcagtaagtaaacaagtttgggataaatcctcataattattttggaatggaactgaagacttttatatcattgagttaatg |
33112211 |
T |
|
| Q |
218 |
cttgaatgagatgcattattttgttatgacttattctttatccgagtgcaacatggccatgcgaagtagtgtaatatttacattttctacatacatttgt |
317 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33112212 |
cttgaattagatgcattattttgttatgacctattctttatccgagtgcaacatggccatgcgaagtagtgtaatatttacattttc----tacatttgt |
33112307 |
T |
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| Q |
318 |
tcatatttggttatactttataaatgaatggtatgagagtacagcacgacgtttacaatctcctccatgttacgtataagtataaccaagtccaccatgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33112308 |
tcatatttggttatactttataaatgaatggtatgagagtacagcacgacgtttacaacctcctccatgttacgtataagtataaccaagtccaccatgc |
33112407 |
T |
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| Q |
418 |
atatgtttgaaaatatgatatgatttgtgtaaaaacttagaagtctattgaaccacacccaattttgtgaatcttgttaaaccattttataaaagtagat |
517 |
Q |
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| T |
33112408 |
atatgtttgaaaatatgatatgatttgtgtaaaaacttagaagtctattgaaccacacccaattttgtgaatcttgttaaaccattttataaaagtagat |
33112507 |
T |
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| Q |
518 |
ttatatggttatctgtg |
534 |
Q |
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|||||||||||| |||| |
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| T |
33112508 |
ttatatggttatgtgtg |
33112524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 44945783 - 44945828
Alignment:
| Q |
48 |
aagaatgcttacaaggagattttagctctgtcaagatactcaggga |
93 |
Q |
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| T |
44945783 |
aagaatgcttacaaggcaattttagctctgtcgagatactcaggga |
44945828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 33966098 - 33966156
Alignment:
| Q |
18 |
aggtttgtgaacaactattggtaatgtacgaagaatgcttacaaggagattttagctct |
76 |
Q |
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|||||||||| |||||| ||| |||||| ||||||||||| |||| |||||||||||| |
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| T |
33966098 |
aggtttgtgatcaactagtggctatgtaccaagaatgcttagaaggtgattttagctct |
33966156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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