View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12218_low_6 (Length: 539)
Name: NF12218_low_6
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12218_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 521
Target Start/End: Original strand, 33735647 - 33736154
Alignment:
| Q |
14 |
gcagagaccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccaga |
113 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735647 |
gcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccaga |
33735746 |
T |
|
| Q |
114 |
gcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtggatccagaagtgg |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735747 |
gcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtggatccagaagtgg |
33735846 |
T |
|
| Q |
214 |
ctgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttggga |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735847 |
ttgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttggga |
33735946 |
T |
|
| Q |
314 |
tagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctgactcaagaacacggaacacttttagttcttgaatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33735947 |
tagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacacttttagttcttgaatt |
33736046 |
T |
|
| Q |
414 |
caataacaagtgaagagnnnnnnnnagctagtgtgtttaattagttattcactaatgtgcataatctttcttccactagctgccttatcacctatgaagt |
513 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736047 |
caataacaagtcaagagttttttttagctagtgtgtttaattagttattcattaatgtgcataatctttcttccactagctgccttatcacctatgaagt |
33736146 |
T |
|
| Q |
514 |
gataattc |
521 |
Q |
| |
|
|||||||| |
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|
| T |
33736147 |
gataattc |
33736154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 33718975 - 33719341
Alignment:
| Q |
15 |
cagagaccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagag |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33718975 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
33719074 |
T |
|
| Q |
115 |
cttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtggatccagaagtggc |
214 |
Q |
| |
|
|||| |||||||| || || ||||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||||| | || | ||| ||||||||| |
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|
| T |
33719075 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagcatgttgaggaaccagaagtgat |
33719174 |
T |
|
| Q |
215 |
tgtccctttggaggat---ataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgg |
311 |
Q |
| |
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|| | || || || | |||||| |||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||| |||||||||||| | |
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| T |
33719175 |
cgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttttg |
33719274 |
T |
|
| Q |
312 |
gatagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctg |
378 |
Q |
| |
|
||||| || || ||| |||||||||||||| | |||| ||||||||| ||| | |||||||||||| |
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|
| T |
33719275 |
gatagcattggtgaacctgattttcaacaatttatgaagtttatggaattttctggagattcttctg |
33719341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 33720993 - 33721170
Alignment:
| Q |
14 |
gcagagaccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33720993 |
gcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctaga |
33721092 |
T |
|
| Q |
114 |
gcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
191 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| || |||||||| ||||||||| | ||||||||||| |||||| |
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|
| T |
33721093 |
gcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaag |
33721170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 33750451 - 33750624
Alignment:
| Q |
18 |
agaccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagagctt |
117 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
33750451 |
agaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggaggaagctgccagagctt |
33750550 |
T |
|
| Q |
118 |
acgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
191 |
Q |
| |
|
| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| || |||||| |
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| T |
33750551 |
atgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaag |
33750624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 238 - 402
Target Start/End: Original strand, 33750683 - 33750847
Alignment:
| Q |
238 |
acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttca |
337 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||| ||||||| || ||||| | ||||||||||||||||||| | || ||| |||||||||| |
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|
| T |
33750683 |
acgagaatatgaatcaagaaatgcaaagtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttca |
33750782 |
T |
|
| Q |
338 |
acaactaatgaggtttatggattttgatagagattcttctgactcaagaacacggaacactttta |
402 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
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|
| T |
33750783 |
acaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacactttta |
33750847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 33721214 - 33721327
Alignment:
| Q |
253 |
aagaaatacaaattgagacaactatgggatttgagagtaataagaat---tgtgatttttgggatagtatcgg---agaagctgattttcaacaactaat |
346 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || ||||| || | |||||||||||||||||||| || ||||||||||||||||||||| || |
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|
| T |
33721214 |
aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat |
33721313 |
T |
|
| Q |
347 |
gaggtttatggatt |
360 |
Q |
| |
|
|||||||||||||| |
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|
| T |
33721314 |
gaggtttatggatt |
33721327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 50102306 - 50102277
Alignment:
| Q |
21 |
ccatggggaaaatgggctgctgagattcgt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50102306 |
ccatggggaaaatgggctgctgagattcgt |
50102277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 6568903 - 6568943
Alignment:
| Q |
15 |
cagagaccatggggaaaatgggctgctgagattcgtgaccc |
55 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
6568903 |
cagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 45437332 - 45437432
Alignment:
| Q |
21 |
ccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagagcttacg |
120 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||| | || ||||||||||| ||||| || | ||| || || |||||||| ||||| |||| |
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|
| T |
45437332 |
ccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagcctacg |
45437431 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
45437432 |
a |
45437432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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