View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12218_low_8 (Length: 341)
Name: NF12218_low_8
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12218_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 42136271 - 42135949
Alignment:
| Q |
17 |
agaaaggagcgggaattaagccagaccctcagattgatgcattcatgaaggcaacatcgctatctggccaggaagccagtttgataacagattacgttct |
116 |
Q |
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| T |
42136271 |
agaaaggagcgggaattaagccagaccctcagattgatgcattcatgaaggcaacatcactatctggccaggaagccagtttgataacagattacgttct |
42136172 |
T |
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| Q |
117 |
caaggtttgtaaagcatgtagaagacgtgtttggcatctgacatgacactgacatattagatgcttgtatatccgtaaaataaagttttggtatcaatat |
216 |
Q |
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| T |
42136171 |
caaggtttgtaaagcatgtagaagacgtgtttggcatctgacatgacactgacatattagatgcttgtatatccgtaaaataaagttttggtatcaatat |
42136072 |
T |
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| Q |
217 |
tccagaaatttatttacattcatttctaaattctaatcttcaattatatgcttgtatagttgcttggactggatatttgtgctgacactaaggttggtga |
316 |
Q |
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| T |
42136071 |
tccagaaatttatttacattcatttctaaattctaatcttcaattatatgcttgtatagttgcttggactggatatttgtgctgacactaaggttggtga |
42135972 |
T |
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| Q |
317 |
tgacatgagaaggggtatctctg |
339 |
Q |
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| T |
42135971 |
tgacatgagaaggggtatctctg |
42135949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 42145210 - 42145148
Alignment:
| Q |
277 |
tgcttggactggatatttgtgctgacactaaggttggtgatgacatgagaaggggtatctctg |
339 |
Q |
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| T |
42145210 |
tgcttggattggatatttgtgctgacattatggttggtgatgaaatgagaaggggtatctctg |
42145148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 42157178 - 42157116
Alignment:
| Q |
277 |
tgcttggactggatatttgtgctgacactaaggttggtgatgacatgagaaggggtatctctg |
339 |
Q |
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| T |
42157178 |
tgcttggattggatatttgtgctgacattatggttggtgatgaaatgagaaggggtatctctg |
42157116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 42157519 - 42157421
Alignment:
| Q |
28 |
ggaattaagccagaccctcagattgatgcattcatgaaggcaacatcgctatctggccaggaagccagtttgataacagattacgttctcaaggtttgt |
126 |
Q |
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| T |
42157519 |
ggaattaaaccagaccctgagattgatgctttcatgaaggctattgcattatcaggccaaaaaaccagttttgtaactgattatgttctcaaggtttgt |
42157421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 42176296 - 42176234
Alignment:
| Q |
277 |
tgcttggactggatatttgtgctgacactaaggttggtgatgacatgagaaggggtatctctg |
339 |
Q |
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| T |
42176296 |
tgcttggattggatatttgtgctgacattatggtaggtggtgaaatgaaaaggggcatctctg |
42176234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 42145563 - 42145523
Alignment:
| Q |
28 |
ggaattaagccagaccctcagattgatgcattcatgaaggc |
68 |
Q |
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| T |
42145563 |
ggaattaaaccagaccctgagattgatgctttcatgaaggc |
42145523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 42176743 - 42176703
Alignment:
| Q |
28 |
ggaattaagccagaccctcagattgatgcattcatgaaggc |
68 |
Q |
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| T |
42176743 |
ggaattaaaccagaccctgagattgatgctttcatgaaggc |
42176703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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