View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12218_low_9 (Length: 332)

Name: NF12218_low_9
Description: NF12218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12218_low_9
NF12218_low_9
[»] chr8 (17 HSPs)
chr8 (165-325)||(12172143-12172303)
chr8 (165-325)||(12416571-12416731)
chr8 (32-101)||(12171990-12172059)
chr8 (32-101)||(12416418-12416487)
chr8 (32-77)||(40649590-40649635)
chr8 (32-87)||(7612109-7612164)
chr8 (165-204)||(42733591-42733630)
chr8 (32-100)||(36023186-36023253)
chr8 (165-204)||(5601013-5601052)
chr8 (165-204)||(5639568-5639607)
chr8 (165-204)||(10839508-10839547)
chr8 (165-204)||(23754733-23754772)
chr8 (165-204)||(25987813-25987852)
chr8 (165-204)||(26026902-26026941)
chr8 (165-204)||(33100495-33100534)
chr8 (167-204)||(7598714-7598751)
chr8 (32-101)||(10309781-10309849)
[»] scaffold0481 (1 HSPs)
scaffold0481 (32-101)||(1101-1169)
[»] chr7 (11 HSPs)
chr7 (32-101)||(2819356-2819424)
chr7 (32-97)||(11778685-11778749)
chr7 (32-85)||(17117058-17117111)
chr7 (168-204)||(9792772-9792808)
chr7 (165-204)||(12007212-12007251)
chr7 (165-204)||(43159601-43159640)
chr7 (165-204)||(47448832-47448871)
chr7 (170-204)||(41750121-41750155)
chr7 (165-202)||(21103020-21103057)
chr7 (168-204)||(21858888-21858923)
chr7 (165-201)||(31445326-31445362)
[»] chr4 (14 HSPs)
chr4 (32-81)||(54128168-54128217)
chr4 (33-101)||(54342885-54342952)
chr4 (165-204)||(51734659-51734698)
chr4 (32-101)||(23719421-23719489)
chr4 (172-204)||(7146153-7146185)
chr4 (165-204)||(54128058-54128098)
chr4 (165-204)||(1033286-1033324)
chr4 (165-204)||(15596534-15596572)
chr4 (165-204)||(51255752-51255791)
chr4 (165-204)||(54909329-54909368)
chr4 (171-204)||(2004221-2004254)
chr4 (165-202)||(25840614-25840651)
chr4 (49-101)||(3698416-3698467)
chr4 (165-201)||(37060326-37060362)
[»] chr1 (13 HSPs)
chr1 (32-101)||(5466235-5466303)
chr1 (32-87)||(38762216-38762271)
chr1 (165-204)||(649774-649813)
chr1 (165-204)||(9566987-9567026)
chr1 (165-204)||(18982525-18982564)
chr1 (165-204)||(19947767-19947806)
chr1 (165-204)||(33466070-33466109)
chr1 (165-204)||(36775112-36775151)
chr1 (165-204)||(42824460-42824499)
chr1 (165-204)||(48983694-48983733)
chr1 (165-204)||(49020430-49020469)
chr1 (32-97)||(4604718-4604782)
chr1 (168-204)||(36775078-36775114)
[»] chr6 (9 HSPs)
chr6 (32-97)||(28982541-28982605)
chr6 (32-100)||(10729675-10729742)
chr6 (166-204)||(23632664-23632702)
chr6 (32-101)||(34383758-34383826)
chr6 (165-204)||(5739790-5739829)
chr6 (165-204)||(24900781-24900820)
chr6 (165-204)||(28982665-28982704)
chr6 (167-204)||(3552182-3552219)
chr6 (49-97)||(2204320-2204367)
[»] chr5 (13 HSPs)
chr5 (32-101)||(21575645-21575713)
chr5 (168-204)||(24468315-24468351)
chr5 (32-97)||(13739543-13739607)
chr5 (32-97)||(26009142-26009205)
chr5 (168-204)||(13332338-13332374)
chr5 (165-204)||(1293112-1293151)
chr5 (165-204)||(1981896-1981934)
chr5 (165-204)||(10008537-10008576)
chr5 (165-204)||(13089808-13089847)
chr5 (165-204)||(16594402-16594441)
chr5 (165-204)||(34379459-34379498)
chr5 (166-204)||(21155993-21156031)
chr5 (170-204)||(27546332-27546366)
[»] chr3 (16 HSPs)
chr3 (32-101)||(50886497-50886565)
chr3 (32-101)||(31350506-31350574)
chr3 (32-101)||(31425633-31425701)
chr3 (32-77)||(31930935-31930980)
chr3 (165-204)||(20380784-20380822)
chr3 (165-204)||(23553615-23553654)
chr3 (165-204)||(31425540-31425579)
chr3 (165-204)||(31931045-31931084)
chr3 (165-204)||(33389014-33389053)
chr3 (165-204)||(37143127-37143166)
chr3 (173-204)||(37788352-37788383)
chr3 (165-204)||(45293055-45293094)
chr3 (165-204)||(52963342-52963381)
chr3 (32-101)||(37143206-37143272)
chr3 (32-77)||(31664733-31664778)
chr3 (171-204)||(41448208-41448241)
[»] chr2 (5 HSPs)
chr2 (165-204)||(7438574-7438613)
chr2 (165-204)||(15260313-15260352)
chr2 (165-204)||(37468284-37468323)
chr2 (165-204)||(41042260-41042298)
chr2 (165-204)||(43057070-43057109)
[»] scaffold0432 (1 HSPs)
scaffold0432 (165-204)||(6546-6585)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 12172143 - 12172303
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatcannnnnnnnnnnnctataggatgcctgaagccataaaggaccgtaactggtgagttatatt 264  Q
    ||||||||||| ||||||||||||||||||||||||||||            | || ||||||||||||||||||||||| |||||||||||||||||||    
T  12172143 ttgtcacaaaatttgtttaaaaatggttgttcaaatatcatttttcttttttcaatgggatgcctgaagccataaaggactgtaactggtgagttatatt 12172242  T
Q  265 ttctggttctttggtttctttgaaaggacttgaaaaatcaactaacaatcacaggttctgc 325  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  12172243 ttctggttttttggtttctttgaaaggacttgaaaaattaactaacaagtacaggttctgc 12172303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 12416571 - 12416731
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatcannnnnnnnnnnnctataggatgcctgaagccataaaggaccgtaactggtgagttatatt 264  Q
    ||||||||||| ||||||||||||||||||||||||||||            | || ||||||||||||||||||||||| |||||||||||||||||||    
T  12416571 ttgtcacaaaatttgtttaaaaatggttgttcaaatatcatttttcttttttcaatgggatgcctgaagccataaaggactgtaactggtgagttatatt 12416670  T
Q  265 ttctggttctttggtttctttgaaaggacttgaaaaatcaactaacaatcacaggttctgc 325  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  12416671 ttctggttttttggtttctttgaaaggacttgaaaaattaactaacaagtacaggttctgc 12416731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 12171990 - 12172059
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12171990 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12172059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 12416418 - 12416487
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12416418 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12416487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 40649635 - 40649590
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctc 77  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  40649635 tttgacaaccaattttcaacaatttttagtgacaacctttttcctc 40649590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 7612109 - 7612164
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatt 87  Q
    |||||||||||||||||||||| |||||| ||||| |||||| || ||||||||||    
T  7612109 tttgacaaccaattttaaacaacttttagggacaatcttttttcttccttcttatt 7612164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 42733591 - 42733630
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  42733591 ttgtcacaaaaattgtttaaaaatggttgttcaaatatca 42733630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 36023253 - 36023186
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaa 100  Q
    |||||||| |||||||||| || |||  ||||||| |||||||||||||| ||| ||||||||||||||    
T  36023253 tttgacaatcaattttaaataattttgggtgacaatctttttcctccctt-ttaattggacaataacaa 36023186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 5601013 - 5601052
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  5601013 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 5601052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 5639607 - 5639568
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  5639607 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 5639568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 10839508 - 10839547
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  10839508 ttgtcacaaaagttgttaaaaattggttgttcaaatatca 10839547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 23754733 - 23754772
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  23754733 ttgtcacaaaagttattaaaaaatggttgttcaaatatca 23754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 25987813 - 25987852
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  25987813 ttgtcacaaaagttgtaaaaaaatggttgttcaaatatca 25987852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 26026941 - 26026902
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  26026941 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 26026902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 33100495 - 33100534
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  33100495 ttgtcacaaaagttgttataaaatggttgttcaaatatca 33100534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 7598751 - 7598714
Alignment:
Q  167 gtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  7598751 gtcacaaaagttgtcaaaaaatggttgttcaaatatca 7598714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 10309781 - 10309849
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    |||||||| ||||||||||||| |||  |||| |||||||||||| | || ||| |||||||||||||||    
T  10309781 tttgacaatcaattttaaacaattttgggtgataacctttttccttctttttta-ttggacaataacaat 10309849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 1101 - 1169
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    |||||||||||||||||||||| |||  |||||||||||||||||| ||||||| |||||||||||||||    
T  1101 tttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttctta-ttggacaataacaat 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 2819424 - 2819356
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  2819424 tttgacaaccaattttcaacaatttttagtgacaacctttttcctctcttttta-ttggacaataacaat 2819356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 11778749 - 11778685
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    |||||||||||||||||||||| |||||| |||||  ||||| || |||||||| |||||||||||    
T  11778749 tttgacaaccaattttaaacaacttttagggacaattttttttcttccttctta-ttggacaataa 11778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 17117058 - 17117111
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttctta 85  Q
    ||||||||||||||||| |||| |||  ||||||||||||||||||| ||||||    
T  17117058 tttgacaaccaattttagacaattttgggtgacaacctttttcctccattctta 17117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9792808 - 9792772
Alignment:
Q  168 tcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9792808 tcacaaaagttgtttaaaagtggttgttcaaatatca 9792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 12007212 - 12007251
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  12007212 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 12007251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 43159601 - 43159640
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  43159601 ttgtcacaaaaattgttaaaaaatggttgttcaaatatca 43159640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 47448871 - 47448832
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  47448871 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 47448832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 41750155 - 41750121
Alignment:
Q  170 acaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||||| ||||||||    
T  41750155 acaaaagttgtttaaaaatggttgtttaaatatca 41750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 21103057 - 21103020
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatat 202  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  21103057 ttgtcacaaaaattgtttaaaaatagttgttcaaatat 21103020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 21858888 - 21858923
Alignment:
Q  168 tcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21858888 tcacaaaagttgtttaaaa-tggttgttcaaatatca 21858923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 31445362 - 31445326
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaata 201  Q
    ||||||||||||||||  |||||||||||||||||||    
T  31445362 ttgtcacaaaagttgtcaaaaaatggttgttcaaata 31445326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 54128217 - 54128168
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctccctt 81  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54128217 tttgacaaccaattttaaacaacttttagtgacaacctttttcctccctt 54128168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 54342952 - 54342885
Alignment:
Q  33 ttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||||||||| |||  ||||||||||| ||||||| |||||| |||||||||||||||    
T  54342952 ttgacaaccaattttaaacaactttgggtgacaaccttgttcctcctttctta-ttggacaataacaat 54342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 51734659 - 51734698
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  51734659 ttgtcacaaaagttgtttaaaagtggttgttcaaatatca 51734698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 23719421 - 23719489
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||| |||||| ||| | ||||||||||||||| || |||||| || ||||||||||||    
T  23719421 tttgacaaccaatttgaaacaactttgaatgacaacctttttccgcctttctta-ttcgacaataacaat 23719489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 7146153 - 7146185
Alignment:
Q  172 aaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||||||||||||    
T  7146153 aaaagttgtttaaaaatggttgttcaaatatca 7146185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 54128098 - 54128058
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttg-ttcaaatatca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  54128098 ttgtcacaaaagttgtttaaaaatggttgtttcaaatatca 54128058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 1033286 - 1033324
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1033286 ttgtcacaaaagttgttt-aaaatggttgttcaaatatca 1033324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 15596534 - 15596572
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15596534 ttgtcacaaaagttgttt-aaaatggttgttcaaatatca 15596572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 51255791 - 51255752
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  51255791 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 51255752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 54909368 - 54909329
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  54909368 ttgtcacaaaaattgtttaataatggttgttcaaatatca 54909329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 2004221 - 2004254
Alignment:
Q  171 caaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| ||||||||||||||||||||||    
T  2004221 caaaagttgttaaaaaatggttgttcaaatatca 2004254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 25840651 - 25840614
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatat 202  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  25840651 ttgtcataaaagttgtttaaaaatggttgtacaaatat 25840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3698467 - 3698416
Alignment:
Q  49 aacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||| ||||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  3698467 aacaatttttagtgacaacttttttcctctcttttta-ttggacaataacaat 3698416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 37060362 - 37060326
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaata 201  Q
    ||||||||||||||||  |||||||||||||||||||    
T  37060362 ttgtcacaaaagttgtcaaaaaatggttgttcaaata 37060326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 5466235 - 5466303
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    |||||||||||||||||||||| |||  |||||||||||||||||| ||||||| |||||||||||||||    
T  5466235 tttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttctta-ttggacaataacaat 5466303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 38762216 - 38762271
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatt 87  Q
    |||||||||||||||||||||| |||||| |||||||||||| || ||||||||||    
T  38762216 tttgacaaccaattttaaacaacttttagggacaaccttttttcttccttcttatt 38762271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 649813 - 649774
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  649813 ttgtcacaaaagttgtaaaaaaatggttgttcaaatatca 649774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 9566987 - 9567026
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  9566987 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 9567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 18982564 - 18982525
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  18982564 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 18982525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 19947767 - 19947806
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19947767 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 19947806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 33466109 - 33466070
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  33466109 ttgtcacataagttgtttaaaaatagttgttcaaatatca 33466070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 36775151 - 36775112
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  36775151 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 36775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 42824499 - 42824460
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  42824499 ttgtcacaaaagtagtttaaaaatggttgatcaaatatca 42824460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 48983694 - 48983733
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  48983694 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 48983733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 49020430 - 49020469
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  49020430 ttgtcacaaaagttgttaaaaaatggttgtacaaatatca 49020469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 4604782 - 4604718
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    ||||||||||||||| |||||| |||||| |||||| ||||| || | |||||| |||||||||||    
T  4604782 tttgacaaccaatttaaaacaacttttagggacaactttttttcttcattctta-ttggacaataa 4604718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 36775114 - 36775078
Alignment:
Q  168 tcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||| |||||||| |||||||||||||    
T  36775114 tcacaaaagttgttaaaaaatggatgttcaaatatca 36775078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 28982541 - 28982605
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||    
T  28982541 tttgacaaccaattttcaacaacttttagtgacaacctttttcctctcttttta-ttggacaataa 28982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 10729742 - 10729675
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaa 100  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||| ||| |||  |||||||||||||    
T  10729742 tttgacaaccaatttccaacaacttttagtgacaacctttttcctctcttttta-ctggacaataacaa 10729675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 23632664 - 23632702
Alignment:
Q  166 tgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  23632664 tgtcacaaaagttgtttaaaagtggttgttcaaatatca 23632702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 34383758 - 34383826
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||| |||||||  ||||| |||||||||||||| |||||||| ||| ||| |||||||||||||||    
T  34383758 tttgacatccaatttctaacaacttttagtgacaacccttttcctctcttttta-ttggacaataacaat 34383826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 5739790 - 5739829
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  5739790 ttgtcacaaaagttgttaaaaaatagttgttcaaatatca 5739829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 24900820 - 24900781
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  24900820 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 24900781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 28982665 - 28982704
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  28982665 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 28982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 3552182 - 3552219
Alignment:
Q  167 gtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  3552182 gtcacaaaagttgttaaaaaatggttgtacaaatatca 3552219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 2204320 - 2204367
Alignment:
Q  49 aacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    ||||| ||||||||||||||||||||||| ||| ||| |||||||||||    
T  2204320 aacaacttttagtgacaacctttttcctctcttttta-ttggacaataa 2204367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 21575645 - 21575713
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||| ||||||  ||||||||||||||    
T  21575645 tttgacaaccaattttaaacaacatttagtgacaacatttttcctccgttctta-atggacaataacaat 21575713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 24468315 - 24468351
Alignment:
Q  168 tcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||||||||||||||||    
T  24468315 tcacaaaagttgtttaaaaatggttgttcaaatatca 24468351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 13739607 - 13739543
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    |||||||||||| ||||||||| |||||| |||||||||||| || |||| ||| |||||||||||    
T  13739607 tttgacaaccaactttaaacaacttttagggacaaccttttttcttccttttta-ttggacaataa 13739543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 26009142 - 26009205
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataa 97  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||||  |||||| |||||||||||    
T  26009142 tttgacaatcaattttaaacaacttttagtgacaacc-ttttcctcttttctta-ttggacaataa 26009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 13332374 - 13332338
Alignment:
Q  168 tcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| |||||||||||||||||||||||||    
T  13332374 tcacaaaagttatttaaaaatggttgttcaaatatca 13332338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 1293112 - 1293151
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  1293112 ttgtcacaaaagttgttaaaaaatggttgtacaaatatca 1293151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 1981934 - 1981896
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1981934 ttgtcacaaaagt-gtttaaaaatggttgttcaaatatca 1981896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 10008537 - 10008576
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  10008537 ttgtcacaaaagttgtttaaaaatgattgttcgaatatca 10008576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 13089808 - 13089847
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  13089808 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatca 13089847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 16594402 - 16594441
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  16594402 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 16594441  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 34379498 - 34379459
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  34379498 ttgtcacaaaaattatttaaaaatggttgttcaaatatca 34379459  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 21156031 - 21155993
Alignment:
Q  166 tgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  21156031 tgtcacaaaagttgtcaaaaaatggttgttcaaatatca 21155993  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 27546366 - 27546332
Alignment:
Q  170 acaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||||||||| ||||    
T  27546366 acaaaagttgtttaaaaatggttgttcaaacatca 27546332  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 50886565 - 50886497
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||||||||||| |||| |||  ||||||||||||||||||| |||||| |||||||||| ||||    
T  50886565 tttgacaaccaattttagacaactttgggtgacaacctttttcctccattctta-ttggacaatagcaat 50886497  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 31350506 - 31350574
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    |||||||||||||||  ||||| ||||||||||||| ||||| ||| ||| ||| |||||||||||||||    
T  31350506 tttgacaaccaatttccaacaacttttagtgacaactttttttctctcttttta-ttggacaataacaat 31350574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 31425701 - 31425633
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||| |||||| || || ||||| ||||||||||||||||| ||| ||| |||||||||||||||    
T  31425701 tttgacaactaattttcaataatttttaatgacaacctttttcctctcttttta-ttggacaataacaat 31425633  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 31930935 - 31930980
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctc 77  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||    
T  31930935 tttgacaaccaatttccaacaaattttagtgataacctttttcctc 31930980  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 20380822 - 20380784
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20380822 ttgtcacaaaagttgttt-aaaatggttgttcaaatatca 20380784  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 23553615 - 23553654
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  23553615 ttgtcacaaaagttgtttaaaagtagttgttcaaatatca 23553654  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 31425579 - 31425540
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  31425579 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 31425540  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 31931045 - 31931084
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  31931045 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 31931084  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 33389053 - 33389014
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  33389053 ttgtcacaaaaattgtttaaaagtggttgttcaaatatca 33389014  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 37143166 - 37143127
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  37143166 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 37143127  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 37788383 - 37788352
Alignment:
Q  173 aaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||||||||||||||||    
T  37788383 aaagttgtttaaaaatggttgttcaaatatca 37788352  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 45293055 - 45293094
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  45293055 ttgtcacaaaagttgtttaaaaatagttgtttaaatatca 45293094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 52963342 - 52963381
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  52963342 ttgtcacaaaagttgttaaaaaatggttgtacaaatatca 52963381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 37143272 - 37143206
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 101  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||  ||| ||| |||||||||||||||    
T  37143272 tttgacaactaatttccaacaacttttagtgacaacctttttcct--cttttta-ttggacaataacaat 37143206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 31664778 - 31664733
Alignment:
Q  32 tttgacaaccaattttaaacaaattttagtgacaacctttttcctc 77  Q
    |||||||||||||||  ||||| ||||||||| |||||||||||||    
T  31664778 tttgacaaccaatttccaacaacttttagtgataacctttttcctc 31664733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 41448208 - 41448241
Alignment:
Q  171 caaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||||||||||| |||||||||    
T  41448208 caaaagttgtttaaaaatggttgtacaaatatca 41448241  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 7438613 - 7438574
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  7438613 ttgtcataaaagttgtttaaaaatggttgttcaaatatca 7438574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 15260352 - 15260313
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  15260352 ttgtcacaaaagttgtctaaaagtggttgttcaaatatca 15260313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 37468284 - 37468323
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  37468284 ttgtcacaaaagttgtttaaaaatgattcttcaaatatca 37468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 41042298 - 41042260
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  41042298 ttgtcacaaaagttgtt-aaaaatggttgttcaaatatca 41042260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 43057109 - 43057070
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  43057109 ttgtcacaaaagttgttaaaaagtggttgttcaaatatca 43057070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 6546 - 6585
Alignment:
Q  165 ttgtcacaaaagttgtttaaaaatggttgttcaaatatca 204  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  6546 ttgtcacaaaagttgttaaaaaatgattgttcaaatatca 6585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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